moved local templates into the moa package

mfiers · Oct 17, 2012 · 9dd15f5 · 9dd15f5
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diff --git a/template2/abyss_pe.jinja2 → .../template/local_templates/abyss_pe.jinja2 b/template2/abyss_pe.jinja2 → .../template/local_templates/abyss_pe.jinja2
diff --git a/template2/abyss_pe.moa → ...moa/template/local_templates/abyss_pe.moa b/template2/abyss_pe.moa → ...moa/template/local_templates/abyss_pe.moa
diff --git a/template2/abyss_se.jinja2 → .../template/local_templates/abyss_se.jinja2 b/template2/abyss_se.jinja2 → .../template/local_templates/abyss_se.jinja2
diff --git a/template2/abyss_se.moa → ...moa/template/local_templates/abyss_se.moa b/template2/abyss_se.moa → ...moa/template/local_templates/abyss_se.moa
diff --git a/template2/archroot.jinja2 → .../template/local_templates/archroot.jinja2 b/template2/archroot.jinja2 → .../template/local_templates/archroot.jinja2
diff --git a/template2/archroot.moa → ...moa/template/local_templates/archroot.moa b/template2/archroot.moa → ...moa/template/local_templates/archroot.moa
diff --git a/template2/bamextract.jinja2 → ...emplate/local_templates/bamextract.jinja2 b/template2/bamextract.jinja2 → ...emplate/local_templates/bamextract.jinja2
diff --git a/template2/bamextract.moa → ...a/template/local_templates/bamextract.moa b/template2/bamextract.moa → ...a/template/local_templates/bamextract.moa
diff --git a/template2/bdbb.jinja2 → .../moa/template/local_templates/bdbb.jinja2 b/template2/bdbb.jinja2 → .../moa/template/local_templates/bdbb.jinja2
diff --git a/template2/bdbb.moa → ...hon/moa/template/local_templates/bdbb.moa b/template2/bdbb.moa → ...hon/moa/template/local_templates/bdbb.moa
diff --git a/template2/bfast_aln.jinja2 → ...template/local_templates/bfast_aln.jinja2 b/template2/bfast_aln.jinja2 → ...template/local_templates/bfast_aln.jinja2
diff --git a/template2/bfast_aln.moa → ...oa/template/local_templates/bfast_aln.moa b/template2/bfast_aln.moa → ...oa/template/local_templates/bfast_aln.moa
diff --git a/template2/bfast_db.jinja2 → .../template/local_templates/bfast_db.jinja2 b/template2/bfast_db.jinja2 → .../template/local_templates/bfast_db.jinja2
diff --git a/template2/bfast_db.moa → ...moa/template/local_templates/bfast_db.moa b/template2/bfast_db.moa → ...moa/template/local_templates/bfast_db.moa
diff --git a/template2/blast.jinja2 → ...moa/template/local_templates/blast.jinja2 b/template2/blast.jinja2 → ...moa/template/local_templates/blast.jinja2
diff --git a/template2/blast.moa → ...on/moa/template/local_templates/blast.moa b/template2/blast.moa → ...on/moa/template/local_templates/blast.moa
diff --git a/template2/blastdb.jinja2 → ...a/template/local_templates/blastdb.jinja2 b/template2/blastdb.jinja2 → ...a/template/local_templates/blastdb.jinja2
diff --git a/template2/blastdb.moa → .../moa/template/local_templates/blastdb.moa b/template2/blastdb.moa → .../moa/template/local_templates/blastdb.moa
diff --git a/template2/bowtie.jinja2 → ...oa/template/local_templates/bowtie.jinja2 b/template2/bowtie.jinja2 → ...oa/template/local_templates/bowtie.jinja2
diff --git a/template2/bowtie.moa → ...n/moa/template/local_templates/bowtie.moa b/template2/bowtie.moa → ...n/moa/template/local_templates/bowtie.moa
diff --git a/template2/bowtie_pe.finish.jinja2 → ...e/local_templates/bowtie_pe.finish.jinja2 b/template2/bowtie_pe.finish.jinja2 → ...e/local_templates/bowtie_pe.finish.jinja2
diff --git a/template2/bowtie_pe.jinja2 → ...template/local_templates/bowtie_pe.jinja2 b/template2/bowtie_pe.jinja2 → ...template/local_templates/bowtie_pe.jinja2
diff --git a/template2/bowtie_pe.moa → ...oa/template/local_templates/bowtie_pe.moa b/template2/bowtie_pe.moa → ...oa/template/local_templates/bowtie_pe.moa
diff --git a/template2/bowtie_se.jinja2 → ...template/local_templates/bowtie_se.jinja2 b/template2/bowtie_se.jinja2 → ...template/local_templates/bowtie_se.jinja2
diff --git a/template2/bowtie_se.moa → ...oa/template/local_templates/bowtie_se.moa b/template2/bowtie_se.moa → ...oa/template/local_templates/bowtie_se.moa
diff --git a/template2/bowtiedb.jinja2 → .../template/local_templates/bowtiedb.jinja2 b/template2/bowtiedb.jinja2 → .../template/local_templates/bowtiedb.jinja2
diff --git a/template2/bowtiedb.moa → ...moa/template/local_templates/bowtiedb.moa b/template2/bowtiedb.moa → ...moa/template/local_templates/bowtiedb.moa
diff --git a/template2/bwa_aln.jinja2 → ...a/template/local_templates/bwa_aln.jinja2 b/template2/bwa_aln.jinja2 → ...a/template/local_templates/bwa_aln.jinja2
diff --git a/template2/bwa_aln.moa → .../moa/template/local_templates/bwa_aln.moa b/template2/bwa_aln.moa → .../moa/template/local_templates/bwa_aln.moa
diff --git a/template2/bwa_index.jinja2 → ...template/local_templates/bwa_index.jinja2 b/template2/bwa_index.jinja2 → ...template/local_templates/bwa_index.jinja2
diff --git a/template2/bwa_index.moa → ...oa/template/local_templates/bwa_index.moa b/template2/bwa_index.moa → ...oa/template/local_templates/bwa_index.moa
diff --git a/template2/bwa_sampe.jinja2 → ...template/local_templates/bwa_sampe.jinja2 b/template2/bwa_sampe.jinja2 → ...template/local_templates/bwa_sampe.jinja2
diff --git a/template2/bwa_sampe.moa → ...oa/template/local_templates/bwa_sampe.moa b/template2/bwa_sampe.moa → ...oa/template/local_templates/bwa_sampe.moa
diff --git a/template2/bwa_samse.jinja2 → ...template/local_templates/bwa_samse.jinja2 b/template2/bwa_samse.jinja2 → ...template/local_templates/bwa_samse.jinja2
diff --git a/template2/bwa_samse.moa → ...oa/template/local_templates/bwa_samse.moa b/template2/bwa_samse.moa → ...oa/template/local_templates/bwa_samse.moa
diff --git a/template2/cdsmatrix.jinja2 → ...template/local_templates/cdsmatrix.jinja2 b/template2/cdsmatrix.jinja2 → ...template/local_templates/cdsmatrix.jinja2
diff --git a/template2/cdsmatrix.moa → ...oa/template/local_templates/cdsmatrix.moa b/template2/cdsmatrix.moa → ...oa/template/local_templates/cdsmatrix.moa
diff --git a/template2/empty.jinja2 → ...moa/template/local_templates/empty.jinja2 b/template2/empty.jinja2 → ...moa/template/local_templates/empty.jinja2
diff --git a/template2/empty.moa → ...on/moa/template/local_templates/empty.moa b/template2/empty.moa → ...on/moa/template/local_templates/empty.moa
diff --git a/template2/fastainfo.finish.py → ...plate/local_templates/fastainfo.finish.py b/template2/fastainfo.finish.py → ...plate/local_templates/fastainfo.finish.py
diff --git a/template2/fastainfo.moa → ...oa/template/local_templates/fastainfo.moa b/template2/fastainfo.moa → ...oa/template/local_templates/fastainfo.moa
diff --git a/template2/fastainfo.run.py → ...template/local_templates/fastainfo.run.py b/template2/fastainfo.run.py → ...template/local_templates/fastainfo.run.py
diff --git a/template2/fastqc.jinja2 → ...oa/template/local_templates/fastqc.jinja2 b/template2/fastqc.jinja2 → ...oa/template/local_templates/fastqc.jinja2
diff --git a/template2/fastqc.moa → ...n/moa/template/local_templates/fastqc.moa b/template2/fastqc.moa → ...n/moa/template/local_templates/fastqc.moa
diff --git a/template2/fastx_clipper.jinja2 → ...late/local_templates/fastx_clipper.jinja2 b/template2/fastx_clipper.jinja2 → ...late/local_templates/fastx_clipper.jinja2
diff --git a/template2/fastx_clipper.moa → ...emplate/local_templates/fastx_clipper.moa b/template2/fastx_clipper.moa → ...emplate/local_templates/fastx_clipper.moa
diff --git a/template2/fastx_qual_stats.jinja2 → ...e/local_templates/fastx_qual_stats.jinja2 b/template2/fastx_qual_stats.jinja2 → ...e/local_templates/fastx_qual_stats.jinja2
diff --git a/template2/fastx_qual_stats.moa → ...late/local_templates/fastx_qual_stats.moa b/template2/fastx_qual_stats.moa → ...late/local_templates/fastx_qual_stats.moa
diff --git a/template2/filterwgs_pair.jinja2 → ...ate/local_templates/filterwgs_pair.jinja2 b/template2/filterwgs_pair.jinja2 → ...ate/local_templates/filterwgs_pair.jinja2
diff --git a/template2/filterwgs_pair.moa → ...mplate/local_templates/filterwgs_pair.moa b/template2/filterwgs_pair.moa → ...mplate/local_templates/filterwgs_pair.moa
diff --git a/template2/genemarks.jinja2 → ...template/local_templates/genemarks.jinja2 b/template2/genemarks.jinja2 → ...template/local_templates/genemarks.jinja2
diff --git a/template2/genemarks.moa → ...oa/template/local_templates/genemarks.moa b/template2/genemarks.moa → ...oa/template/local_templates/genemarks.moa
diff --git a/template2/glimmer3.jinja2 → .../template/local_templates/glimmer3.jinja2 b/template2/glimmer3.jinja2 → .../template/local_templates/glimmer3.jinja2
diff --git a/template2/glimmer3.moa → ...moa/template/local_templates/glimmer3.moa b/template2/glimmer3.moa → ...moa/template/local_templates/glimmer3.moa
diff --git a/template2/gmap.jinja2 → .../moa/template/local_templates/gmap.jinja2 b/template2/gmap.jinja2 → .../moa/template/local_templates/gmap.jinja2
diff --git a/template2/gmap.moa → ...hon/moa/template/local_templates/gmap.moa b/template2/gmap.moa → ...hon/moa/template/local_templates/gmap.moa
diff --git a/template2/gmapdb.jinja2 → ...oa/template/local_templates/gmapdb.jinja2 b/template2/gmapdb.jinja2 → ...oa/template/local_templates/gmapdb.jinja2
diff --git a/template2/gmapdb.moa → ...n/moa/template/local_templates/gmapdb.moa b/template2/gmapdb.moa → ...n/moa/template/local_templates/gmapdb.moa
diff --git a/template2/gsMapper.jinja2 → .../template/local_templates/gsMapper.jinja2 b/template2/gsMapper.jinja2 → .../template/local_templates/gsMapper.jinja2
diff --git a/template2/hagfish.jinja2 → ...a/template/local_templates/hagfish.jinja2 b/template2/hagfish.jinja2 → ...a/template/local_templates/hagfish.jinja2
diff --git a/template2/hagfish.moa → .../moa/template/local_templates/hagfish.moa b/template2/hagfish.moa → .../moa/template/local_templates/hagfish.moa
diff --git a/template2/kanga.jinja2 → ...moa/template/local_templates/kanga.jinja2 b/template2/kanga.jinja2 → ...moa/template/local_templates/kanga.jinja2
diff --git a/template2/kanga.moa → ...on/moa/template/local_templates/kanga.moa b/template2/kanga.moa → ...on/moa/template/local_templates/kanga.moa
diff --git a/template2/kangar_pe.jinja2 → ...template/local_templates/kangar_pe.jinja2 b/template2/kangar_pe.jinja2 → ...template/local_templates/kangar_pe.jinja2
diff --git a/template2/kangar_pe.moa → ...oa/template/local_templates/kangar_pe.moa b/template2/kangar_pe.moa → ...oa/template/local_templates/kangar_pe.moa
diff --git a/template2/kangar_se.jinja2 → ...template/local_templates/kangar_se.jinja2 b/template2/kangar_se.jinja2 → ...template/local_templates/kangar_se.jinja2
diff --git a/template2/kangar_se.moa → ...oa/template/local_templates/kangar_se.moa b/template2/kangar_se.moa → ...oa/template/local_templates/kangar_se.moa
diff --git a/template2/kangax.jinja2 → ...oa/template/local_templates/kangax.jinja2 b/template2/kangax.jinja2 → ...oa/template/local_templates/kangax.jinja2
diff --git a/template2/kangax.moa → ...n/moa/template/local_templates/kangax.moa b/template2/kangax.moa → ...n/moa/template/local_templates/kangax.moa
diff --git a/template2/map.jinja2 → ...n/moa/template/local_templates/map.jinja2 b/template2/map.jinja2 → ...n/moa/template/local_templates/map.jinja2
diff --git a/template2/map.moa → ...thon/moa/template/local_templates/map.moa b/template2/map.moa → ...thon/moa/template/local_templates/map.moa
diff --git a/template2/map2.jinja2 → .../moa/template/local_templates/map2.jinja2 b/template2/map2.jinja2 → .../moa/template/local_templates/map2.jinja2
diff --git a/template2/map2.moa → ...hon/moa/template/local_templates/map2.moa b/template2/map2.moa → ...hon/moa/template/local_templates/map2.moa
diff --git a/template2/map22.jinja2 → ...moa/template/local_templates/map22.jinja2 b/template2/map22.jinja2 → ...moa/template/local_templates/map22.jinja2
diff --git a/template2/map22.moa → ...on/moa/template/local_templates/map22.moa b/template2/map22.moa → ...on/moa/template/local_templates/map22.moa
diff --git a/template2/maq_pe.jinja2 → ...oa/template/local_templates/maq_pe.jinja2 b/template2/maq_pe.jinja2 → ...oa/template/local_templates/maq_pe.jinja2
diff --git a/template2/maq_pe.moa → ...n/moa/template/local_templates/maq_pe.moa b/template2/maq_pe.moa → ...n/moa/template/local_templates/maq_pe.moa
diff --git a/template2/maq_se.jinja2 → ...oa/template/local_templates/maq_se.jinja2 b/template2/maq_se.jinja2 → ...oa/template/local_templates/maq_se.jinja2
diff --git a/template2/maq_se.moa → ...n/moa/template/local_templates/maq_se.moa b/template2/maq_se.moa → ...n/moa/template/local_templates/maq_se.moa
diff --git a/template2/mummer.jinja2 → ...oa/template/local_templates/mummer.jinja2 b/template2/mummer.jinja2 → ...oa/template/local_templates/mummer.jinja2
diff --git a/template2/mummer.moa → ...n/moa/template/local_templates/mummer.moa b/template2/mummer.moa → ...n/moa/template/local_templates/mummer.moa
diff --git a/template2/ncbi.jinja2 → .../moa/template/local_templates/ncbi.jinja2 b/template2/ncbi.jinja2 → .../moa/template/local_templates/ncbi.jinja2
diff --git a/template2/ncbi.moa → ...hon/moa/template/local_templates/ncbi.moa b/template2/ncbi.moa → ...hon/moa/template/local_templates/ncbi.moa
diff --git a/template2/orthomcl.jinja2 → .../template/local_templates/orthomcl.jinja2 b/template2/orthomcl.jinja2 → .../template/local_templates/orthomcl.jinja2
diff --git a/template2/orthomcl.moa → ...moa/template/local_templates/orthomcl.moa b/template2/orthomcl.moa → ...moa/template/local_templates/orthomcl.moa
diff --git a/template2/orthomcl.tables.py → ...mplate/local_templates/orthomcl.tables.py b/template2/orthomcl.tables.py → ...mplate/local_templates/orthomcl.tables.py
diff --git a/template2/project.jinja2 → ...a/template/local_templates/project.jinja2 b/template2/project.jinja2 → ...a/template/local_templates/project.jinja2
diff --git a/template2/project.moa → .../moa/template/local_templates/project.moa b/template2/project.moa → .../moa/template/local_templates/project.moa
diff --git a/template2/recursive_map.jinja2 → ...late/local_templates/recursive_map.jinja2 b/template2/recursive_map.jinja2 → ...late/local_templates/recursive_map.jinja2
diff --git a/template2/recursive_map.moa → ...emplate/local_templates/recursive_map.moa b/template2/recursive_map.moa → ...emplate/local_templates/recursive_map.moa
diff --git a/template2/reduce.jinja2 → ...oa/template/local_templates/reduce.jinja2 b/template2/reduce.jinja2 → ...oa/template/local_templates/reduce.jinja2
diff --git a/template2/reduce.moa → ...n/moa/template/local_templates/reduce.moa b/template2/reduce.moa → ...n/moa/template/local_templates/reduce.moa
diff --git a/template2/samtools_pileup.jinja2 → ...te/local_templates/samtools_pileup.jinja2 b/template2/samtools_pileup.jinja2 → ...te/local_templates/samtools_pileup.jinja2
diff --git a/template2/samtools_pileup.moa → ...plate/local_templates/samtools_pileup.moa b/template2/samtools_pileup.moa → ...plate/local_templates/samtools_pileup.moa
diff --git a/template2/simple.jinja2 → ...oa/template/local_templates/simple.jinja2 b/template2/simple.jinja2 → ...oa/template/local_templates/simple.jinja2
diff --git a/template2/simple.moa → ...n/moa/template/local_templates/simple.moa b/template2/simple.moa → ...n/moa/template/local_templates/simple.moa
diff --git a/template2/smalt_pe.jinja2 → .../template/local_templates/smalt_pe.jinja2 b/template2/smalt_pe.jinja2 → .../template/local_templates/smalt_pe.jinja2
diff --git a/template2/smalt_pe.moa → ...moa/template/local_templates/smalt_pe.moa b/template2/smalt_pe.moa → ...moa/template/local_templates/smalt_pe.moa
diff --git a/template2/smaltdb.jinja2 → ...a/template/local_templates/smaltdb.jinja2 b/template2/smaltdb.jinja2 → ...a/template/local_templates/smaltdb.jinja2
diff --git a/template2/smaltdb.moa → .../moa/template/local_templates/smaltdb.moa b/template2/smaltdb.moa → .../moa/template/local_templates/smaltdb.moa
diff --git a/template2/soapdenovo_pe.jinja2 → ...late/local_templates/soapdenovo_pe.jinja2 b/template2/soapdenovo_pe.jinja2 → ...late/local_templates/soapdenovo_pe.jinja2
diff --git a/template2/soapdenovo_pe.moa → ...emplate/local_templates/soapdenovo_pe.moa b/template2/soapdenovo_pe.moa → ...emplate/local_templates/soapdenovo_pe.moa
diff --git a/template2/soapdenovo_postprocess.jinja2 → ...l_templates/soapdenovo_postprocess.jinja2 b/template2/soapdenovo_postprocess.jinja2 → ...l_templates/soapdenovo_postprocess.jinja2
diff --git a/template2/soapdenovo_postprocess.moa → ...ocal_templates/soapdenovo_postprocess.moa b/template2/soapdenovo_postprocess.moa → ...ocal_templates/soapdenovo_postprocess.moa
diff --git a/template2/statsidx.jinja2 → .../template/local_templates/statsidx.jinja2 b/template2/statsidx.jinja2 → .../template/local_templates/statsidx.jinja2
diff --git a/template2/statsidx.moa → ...moa/template/local_templates/statsidx.moa b/template2/statsidx.moa → ...moa/template/local_templates/statsidx.moa
diff --git a/template2/sync.jinja2 → .../moa/template/local_templates/sync.jinja2 b/template2/sync.jinja2 → .../moa/template/local_templates/sync.jinja2
diff --git a/template2/sync.moa → ...hon/moa/template/local_templates/sync.moa b/template2/sync.moa → ...hon/moa/template/local_templates/sync.moa
diff --git a/template2/sync.run.py → .../moa/template/local_templates/sync.run.py b/template2/sync.run.py → .../moa/template/local_templates/sync.run.py
diff --git a/template2/unittest.jinja2 → .../template/local_templates/unittest.jinja2 b/template2/unittest.jinja2 → .../template/local_templates/unittest.jinja2
diff --git a/template2/unittest.moa → ...moa/template/local_templates/unittest.moa b/template2/unittest.moa → ...moa/template/local_templates/unittest.moa
diff --git a/template2/wget.jinja2 → .../moa/template/local_templates/wget.jinja2 b/template2/wget.jinja2 → .../moa/template/local_templates/wget.jinja2
diff --git a/template2/wget.moa → ...hon/moa/template/local_templates/wget.moa b/template2/wget.moa → ...hon/moa/template/local_templates/wget.moa
diff --git a/template2 b/template2
@@ -0,0 +1 @@
+lib/python/moa/template/local_templates/