unittest works again

mfiers · Sep 13, 2012 · a46b443 · a46b443
1 parent 5ca1985
commit a46b443
Showing 1 changed file with 7 additions and 6 deletions.
diff --git a/template2/blast.jinja2 b/template2/blast.jinja2
@@ -20,19 +20,20 @@ cat {{ output }} | blast2gff -b {{ gff_blasthit }}     \
     blastReport out/ -o blast_report
 
 ### unittest
-    mkdir 10.blastdb
+
+    mkdir -p 10.blastdb
     cd 10.blastdb
     moa new blastdb -t 'test blast database'
-    moa set fasta_file=$MOABASE/share/test/test.fasta
+    moa set input=$MOABASE/share/test/test.fasta
     echo "running blastdb"
     moa run
     cd ../
     mkdir 20.blast
     cd 20.blast
     moa new blast -t 'test blast'
-    moa set db=../10.blastdb/blastdb
-    moa set input=$MOABASE/share/test/*.fasta -j 12
+    moa set db=../10.blastdb/db
+    moa set input=$MOABASE/share/test/*.fasta
     echo "running blast"
     moa run
-    echo "finished running blast"        
-    ls -l
+    echo "finished running blast"
+    [[ -f "blast_report" ]]