A selection of publications that used or referenced :program:`MIRACL`:
Hsueh, B., Chen, R., Jo, Y., Tang, D., Raffiee, M., Kim, Y. S., ... Goubran, M., & Deisseroth, K. (2023). Cardiogenic control of affective behavioural state. Nature, 1-8.
Qu, L., Li, Y., Xie, P., Liu, L., Wang, Y., Wu, J., ... & Peng, H. (2022). Cross-modal coherent registration of whole mouse brains. Nature Methods, 19(1), 111-118.
Georgiadis, M., Schroeter, A., Gao, Z., Guizar-Sicairos, M., Liebi, M., Leuze, C., ... & Rudin, M. (2021). Nanostructure-specific X-ray tomography reveals myelin levels, integrity and axon orientations in mouse and human nervous tissue. Nature communications, 12(1), 2941.
Wang, X., Zeng, W., Yang, X., Zhang, Y., Fang, C., Zeng, S., ... & Fei, P. (2021). Bi-channel image registration and deep-learning segmentation (BIRDS) for efficient, versatile 3D mapping of mouse brain. Elife, 10, e63455.
Boillat, M., Hammoudi, P. M., Dogga, S. K., Pages, S., Goubran, M., Rodriguez, I., & Soldati-Favre, D. (2020). Neuroinflammation-associated aspecific manipulation of mouse predator fear by Toxoplasma gondii. Cell reports, 30(2), 320-334.
Pallast, N., Wieters, F., Nill, M., Fink, G. R., & Aswendt, M. (2020). Graph theoretical quantification of white matter reorganization after cortical stroke in mice. NeuroImage, 217, 116873.
Ito, M., Aswendt, M., Lee, A. G., Ishizaka, S., Cao, Z., Wang, E. H., ... & Steinberg, G. K. (2018). RNA-sequencing analysis revealed a distinct motor cortex transcriptome in spontaneously recovered mice after stroke. Stroke, 49(9), 2191-2199.