Citation guidelines for using MIRACL in your work.
If you use :program:`MIRACL` in your work please cite our paper:
Goubran, M., Leuze, C., Hsueh, B., Aswendt, M., Ye, L., Tian, Q., Cheng, M.Y., Crow, A., Steinberg, G.K., McNab, J.A., Deisseroth, K., and Zeineh, M. (2019). Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI. Nature communications, 10(1), 5504.
@article{goubran2019multimodal,
title={Multimodal image registration and connectivity analysis for integration of connectomic data from microscopy to MRI},
author={Goubran, Maged and Leuze, Christoph and Hsueh, Brian and Aswendt, Markus and Ye, Li and Tian, Qiyuan and Cheng, Michelle Y and Crow, Ailey and Steinberg, Gary K and McNab, Jennifer A and Deisseroth, Karl and Zeineh, Michael},
journal={Nature communications},
volume={10},
number={1},
pages={5504},
year={2019},
publisher={Nature Publishing Group UK London}
}
Some of our functions build on or use these tools (please cite their work if you are using them):
| Tool | Function |
|---|---|
| Allen Regional Atlas | Atlas registration |
| Allen Connectivity Atlas | Connectivity analyses |
| ANTs | Registration |
| Fiji | Segmentation |
| c3d | Image processing |
| FSL | Diffusion MRI processing |
| MRtrix3 | Tractography |
| TrackVis/DTK | Tractography |