Merge pull request #79 from AICONSlab/jo-copyright

[pr] fix all outdated authors information
AICONSlab · Nov 8, 2022 · e2fd5a9 · e2fd5a9
2 parents fd6434a + 08428ec
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diff --git a/README.md b/README.md
@@ -18,7 +18,7 @@ is a general-purpose, open-source pipeline for automated:
     6) Statistical analysis of CLARITY & Imaging data
     7) Atlas generation & Label manipulation
 
-Copyright (c) 2019 Maged Goubran, maged.goubran@utoronto.ca
+Copyright (c) 2022 Maged Goubran, maged.goubran@utoronto.ca
 
 All Rights Reserved. 
 

diff --git a/docs/conf.py b/docs/conf.py
@@ -20,7 +20,7 @@
 # -- Project information -----------------------------------------------------
 
 project = 'MIRACL'
-copyright = '2018, BrainLab'
+copyright = '2022, AICONSlab'
 author = 'Maged Goubran'
 
 # The short X.Y version
@@ -157,4 +157,4 @@
     (master_doc, 'MIRACL', 'MIRACL Documentation',
      author, 'MIRACL', 'MIRACL is a general-purpose analysis pipeline',
      'Science'),
-]
+]
diff --git a/docs/index.rst b/docs/index.rst
@@ -23,7 +23,7 @@ MIRACL (Multi-modal Image Registration And Connectivity anaLysis) is a general-p
     6) Statistical analysis of CLARITY & Imaging data
     7) Atlas generation & Label manipulation
 
-Copyright (c) 2019 Maged Goubran, maged.goubran@utoronto.ca
+Copyright (c) 2022 Maged Goubran, maged.goubran@utoronto.ca
 
 All Rights Reserved.
 

diff --git a/miracl/connect/miracl_connect_ROI_matrix_connectogram.py b/miracl/connect/miracl_connect_ROI_matrix_connectogram.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/connect/miracl_connect_csd_tractography.sh b/miracl/connect/miracl_connect_csd_tractography.sh
@@ -60,8 +60,8 @@ Optional arguments:
 
 	-----------------------------------
 
-	(c) Maged Goubran @ Stanford University, 2017
-	mgoubran@stanford.edu
+	(c) Maged Goubran @ AICONSlab, 2022
+	maged.goubran@utoronto.ca
 	
 	-----------------------------------
 	

diff --git a/miracl/connect/miracl_connect_label_graph_proj_dens.py b/miracl/connect/miracl_connect_label_graph_proj_dens.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/conv/miracl_conv_convertDCMtoNII.sh b/miracl/conv/miracl_conv_convertDCMtoNII.sh
@@ -32,8 +32,8 @@ function usage()
 
     -----------------------------------
 
-	(c) Maged Goubran @ Stanford University, 2016
-	mgoubran@stanford.edu
+	(c) Maged Goubran @ AICONSlab, 2022
+	maged.goubran@utoronto.ca
 
     -----------------------------------
 

diff --git a/miracl/conv/miracl_conv_convertNIItoTIFF.py b/miracl/conv/miracl_conv_convertNIItoTIFF.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/conv/miracl_conv_convertTIFFtoNII.py b/miracl/conv/miracl_conv_convertTIFFtoNII.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/conv/miracl_conv_file_folder_gui.py b/miracl/conv/miracl_conv_file_folder_gui.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8 
 

diff --git a/miracl/conv/miracl_conv_gui_options.py b/miracl/conv/miracl_conv_gui_options.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8 
 

diff --git a/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm b/miracl/deprec/miracl_analyze_particles_clarity_3D.ijm
@@ -4,7 +4,7 @@
 // Extracts features from segmented clarity data using 3D partcile analysis
 // & summarizes the data per label (Allen atlas label)
 //
-// (c) Maged Goubran, mgoubran@stanford.edu, 2016
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 // 
 // dependencies:
 //

diff --git a/miracl/deprec/miracl_extract_clarity_features_wrapper.sh b/miracl/deprec/miracl_extract_clarity_features_wrapper.sh
@@ -54,8 +54,8 @@ function usage()
 
 	-----------------------------------
 	
-	(c) Maged Goubran @ Stanford University, 2016
-	mgoubran@stanford.edu
+	(c) Maged Goubran @ AICONSlab, 2022
+	maged.goubran@utoronto.ca
 	
 	-----------------------------------
 

diff --git a/miracl/deprec/miracl_io_file_folder_gui_tkinter.py b/miracl/deprec/miracl_io_file_folder_gui_tkinter.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/deprec/miracl_io_gui_options_pyqt.py b/miracl/deprec/miracl_io_gui_options_pyqt.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8 
 

diff --git a/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py b/miracl/deprec/miracl_utils_int_corr_tiffs_2D.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py b/miracl/lbls/miracl_lbls_generate_grand-parent_annotation.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/lbls/miracl_lbls_generate_parents_at_depth.py b/miracl/lbls/miracl_lbls_generate_parents_at_depth.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/lbls/miracl_lbls_get_gp_volumes.py b/miracl/lbls/miracl_lbls_get_gp_volumes.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/lbls/miracl_lbls_get_graph_info.py b/miracl/lbls/miracl_lbls_get_graph_info.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/lbls/miracl_lbls_stats.py b/miracl/lbls/miracl_lbls_stats.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu
+# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/lbls/miracl_lbls_warp_to_clar_space.sh b/miracl/lbls/miracl_lbls_warp_to_clar_space.sh
@@ -53,8 +53,8 @@ function usage()
 
 	-----------------------------------
 	
-	(c) Maged Goubran @ Stanford University, 2016
-	mgoubran@stanford.edu
+	(c) Maged Goubran @ AICONSlab, 2022
+	maged.goubran@utoronto.ca
 	
 	-----------------------------------
 

diff --git a/miracl/lbls/miracl_lbls_warp_to_mri_space.sh b/miracl/lbls/miracl_lbls_warp_to_mri_space.sh
@@ -51,8 +51,8 @@ function usage()
 
 	-----------------------------------
 	
-	(c) Maged Goubran @ Stanford University, 2016
-	mgoubran@stanford.edu
+	(c) Maged Goubran @ AICONSlab, 2022
+	maged.goubran@utoronto.ca
 	
 	-----------------------------------
 

diff --git a/miracl/miraclGUI.py b/miracl/miraclGUI.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8 
 

diff --git a/miracl/reg/miracl_reg_check_results.py b/miracl/reg/miracl_reg_check_results.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/seg/miracl_seg_feat_extract.py b/miracl/seg/miracl_seg_feat_extract.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/seg/miracl_seg_feats_cortex.py b/miracl/seg/miracl_seg_feats_cortex.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2018, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ
 // Segments cFos positive nuclei in cleared mouse brain in 3D using CLARITY/iDISCO+ and immunolabelling
 //
-// (c) Maged Goubran, mgoubran@stanford.edu, 2018
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 // 	   Newton Cho, newton.cho@epfl.ch,
 // 	   Jordan Squair, jordansquair@gmail.com
 //

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_cfos2.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ 
 // Segments neurons in cleared mouse brain of virus stains in 3D
 // 
-// (c) Maged Goubran, mgoubran@stanford.edu, 2018
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 //
 // based on plugins from:
 // 

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_nuclear.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ 
 // Segments neurons in cleared mouse brain in 3D
 // 
-// (c) Maged Goubran, mgoubran@stanford.edu, 2018
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 //
 // based on plugins from:
 // 

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_play.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ 
 // Segments neurons in cleared mouse brain of virus stains in 3D
 // 
-// (c) Maged Goubran, mgoubran@stanford.edu, 2016
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 //
 // based on plugins from:
 // 

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_sparse.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ 
 // Segments neurons in cleared mouse brain of sparse stains (like Thy1) in 3D 
 // 
-// (c) Maged Goubran, mgoubran@stanford.edu, 2018
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 //
 // based on plugins from:
 // 

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_virus.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ 
 // Segments neurons in cleared mouse brain of virus stains in 3D
 // 
-// (c) Maged Goubran, mgoubran@stanford.edu, 2018
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 //
 // based on plugins from:
 // 

diff --git a/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm b/miracl/seg/miracl_seg_neurons_clarity_3D_virus_conserve.ijm
@@ -3,7 +3,7 @@
 // Macro for Fiji/ImageJ 
 // Segments neurons in cleared mouse brain of virus stains in 3D
 // 
-// (c) Maged Goubran, mgoubran@stanford.edu, 2018
+// (c) Maged Goubran, maged.goubran@utoronto.ca, 2022
 //
 // based on plugins from:
 // 

diff --git a/miracl/seg/miracl_seg_voxelize_parallel.py b/miracl/seg/miracl_seg_voxelize_parallel.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ Stanford 2017, mgoubran@stanford.edu 
+# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/sta/miracl_sta_create_force_graph.py b/miracl/sta/miracl_sta_create_force_graph.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu
+# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/sta/miracl_sta_gen_tract_density.py b/miracl/sta/miracl_sta_gen_tract_density.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu
+# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/sta/miracl_sta_gen_tract_endpoints.py b/miracl/sta/miracl_sta_gen_tract_endpoints.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ Stanford 2018, mgoubran@stanford.edu
+# Maged Goubran @ AICONSlab 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/sta/miracl_sta_track.py b/miracl/sta/miracl_sta_track.py
@@ -59,8 +59,8 @@ def helpmsg():
     -----------------------------------
     (c) Qiyuan Tian @ Stanford University, 2016
     qytian@stanford.edu
-    (c) Maged Goubran @ Stanford University, 2016
-    mgoubran@stanford.edu
+    (c) Maged Goubran @ AICONSlab, 2022
+    maged.goubran@utoronto.ca
     -----------------------------------
     '''
 
@@ -355,4 +355,4 @@ def main(args):
 
 
 if __name__ == "__main__":
-    main(sys.argv)
+    main(sys.argv)
diff --git a/miracl/sta/miracl_sta_track_primary_eigen.py b/miracl/sta/miracl_sta_track_primary_eigen.py
@@ -53,8 +53,8 @@ def helpmsg():
 	-----------------------------------
 	(c) Qiyuan Tian @ Stanford University, 2016
 	qytian@stanford.edu
-	(c) Maged Goubran @ Stanford University, 2016
-	mgoubran@stanford.edu
+	(c) Maged Goubran @ AICONSlab, 2022
+	maged.goubran@utoronto.ca
 	-----------------------------------
 	'''
 
@@ -131,4 +131,4 @@ def main(args):
 
 
 if __name__ == "__main__":
-    main(sys.argv)
+    main(sys.argv)
diff --git a/miracl/sta/sta_gui.py b/miracl/sta/sta_gui.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8 
 

diff --git a/miracl/stats/miracl_stats_paired_ttest_group.py b/miracl/stats/miracl_stats_paired_ttest_group.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py b/miracl/stats/miracl_stats_paired_ttest_ipsi_contra.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/stats/miracl_stats_voxel_wise.py b/miracl/stats/miracl_stats_voxel_wise.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2019, maged.goubran@sri.utoronto.ca
+# Maged Goubran @ 2022, maged.goubran@sri.utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/utilfn/miracl_utilfn_create_brainmask.py b/miracl/utilfn/miracl_utilfn_create_brainmask.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8
 

diff --git a/miracl/utilfn/miracl_utilfn_endstatement.py b/miracl/utilfn/miracl_utilfn_endstatement.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env python
-# Maged Goubran @ 2017, mgoubran@stanford.edu
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca
 
 # coding: utf-8
 

diff --git a/miracl/utilfn/miracl_utilfn_extract_lbl.py b/miracl/utilfn/miracl_utilfn_extract_lbl.py
@@ -1,5 +1,5 @@
 #!/usr/bin/env python
-# Maged Goubran @ 2016, mgoubran@stanford.edu 
+# Maged Goubran @ 2022, maged.goubran@utoronto.ca 
 
 # coding: utf-8