Bugfix for RunScript

mianalysis · Jun 7, 2024 · 9e93fab · 9e93fab
1 parent 0d9a9ef
commit 9e93fab
Show file tree

Hide file tree

Showing 2 changed files with 6 additions and 6 deletions.
diff --git a/mia-modules/src/main/java/io/github/mianalysis/mia/module/script/RunScript.java b/mia-modules/src/main/java/io/github/mianalysis/mia/module/script/RunScript.java
@@ -476,10 +476,10 @@ public MetadataRefs updateAndGetMetadataReferences() {
 
         ParameterGroup group = parameters.getParameter(ADD_OUTPUT);
         LinkedHashMap<Integer, Parameters> collections = group.getCollections(true);
-
+        
         for (Parameters collection : collections.values()) {
             if (collection.getValue(OUTPUT_TYPE, workspace).equals(OutputTypes.METADATA)) {
-                String metadataName = collection.getValue(OBJECT_METADATA_NAME, workspace);
+                String metadataName = collection.getValue(METADATA_NAME, workspace);
                 MetadataRef ref = metadataRefs.getOrPut(metadataName);
                 returnedRefs.add(ref);
             }

diff --git a/mia-plugin/pom.xml b/mia-plugin/pom.xml
@@ -215,7 +215,7 @@
                 <artifactId>maven-gpg-plugin</artifactId>
             </plugin>
 
-            <!-- <plugin>
+            <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-jar-plugin</artifactId>
                 <version>2.6</version>
@@ -229,7 +229,7 @@
                         </manifest>
                     </archive>
                 </configuration>
-            </plugin> -->
+            </plugin>
 
             <!-- To be uncommented when creating release, but commented when uploading to Maven Central -->
             <!-- <plugin>
@@ -258,7 +258,7 @@
                 </configuration>
             </plugin> -->
 
-            <!-- <plugin>
+            <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-dependency-plugin</artifactId>
                 <version>3.0.0</version>
@@ -284,7 +284,7 @@
                         </configuration>
                     </execution>
                 </executions>
-            </plugin> -->
+            </plugin>
         </plugins>
     </build>
 </project>