Study title: "Cultivation and antimicrobial screening of sponge-associated bacteria from the marine sponges Agelas sventres and Xestospongia muta collected from different depths" Authors: Anak Agung Gede Indraningrat, Sebastian Micheller, Mandy Runderkamp, Ina Sauerland1, Leontine. E. Becking, Hauke Smidt and Detmer Sipkema
In this repository are all the files and codes used for reproducible data analysis Below is a short descriptions of the files.
#Complete workflow
Manuscript_cultivation.rmd contains -R Markdown file containing all details and analysis scripts used in this study.
#Biom File
Cultivation_final.biom provides 16S rRNA gene amplicon sequencing data, classified to Genus level (SILVA SSU 128 database)
#Mapping File
Mapping_cultivation.csv contains metadata for individual samples
#Phyloggenetic tree
DG.tre contains phylogenetic tree information of OTUs.
#Heatmap
HeatMap.csv contains list of OTUs with average relative abundance above 0.25% in all samples.
All questions or comments concerning this analysis can be directed at indraningrat@warmadewa.ac.id