This is a gwf plugin for providing information about how well allocated resources have been used. Note that only the Slurm backend is supported.
$ gwf utilization
+---------------------------------------+-------+----------------+---------------+--------------+-------------+----------------+---------------+------------+----------+-------+
| Target | Cores | Walltime Alloc | Walltime Used | Memory Alloc | Memory Used | CPU Time Alloc | CPU Time Used | Walltime % | Memory % | CPU % |
+=======================================+=======+================+===============+==============+=============+================+===============+============+==========+=======+
| TrimAdapterSequences_SampleName_Lane1 | 16 | 00:15:00 | 00:02:58 | 1.0 GB | 819.68 MB | 04:00:00 | 00:15:08 | 19.8 | 80.0 | 6.3 |
| TrimAdapterSequences_SampleName_Lane2 | 16 | 00:15:00 | 00:02:49 | 1.0 GB | 786.86 MB | 04:00:00 | 00:14:12 | 18.8 | 76.8 | 5.9 |
| TrimAdapterSequences_SampleName_Lane3 | 16 | 00:15:00 | 00:02:51 | 1.0 GB | 778.34 MB | 04:00:00 | 00:14:49 | 19.0 | 76.0 | 6.2 |
| TrimAdapterSequences_SampleName_Lane4 | 16 | 00:15:00 | 00:02:53 | 1.0 GB | 809.82 MB | 04:00:00 | 00:14:43 | 19.2 | 79.1 | 6.1 |
| MergeTrimmedFastqFiles_SampleName | 1 | 00:05:00 | 00:00:33 | 128.0 MB | 752.0 KB | 00:05:00 | 00:00:18 | 11.0 | 0.6 | 6.0 |
| StarAlignment_SampleName | 36 | 00:30:00 | 00:12:43 | 64.0 GB | 43.91 GB | 18:00:00 | 03:10:08 | 42.4 | 68.6 | 17.6 |
| StarFusion_SampleName | 16 | 01:00:00 | 00:37:43 | 64.0 GB | 41.2 GB | 16:00:00 | 03:59:23 | 62.9 | 64.4 | 24.9 |
+---------------------------------------+-------+----------------+---------------+--------------+-------------+----------------+---------------+------------+----------+-------+
The simplest way to install gwf-utilization is by using conda:
$ conda install -c micknudsen gwf-utilization