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91 Open 240 Closed
91 Open 240 Closed
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Issues list

berkeley: Fix failing test test_get_pi in tests/test_data/test_gold_translator.py berkeley-schema Related to making the Runtime work with the Berkeley schema bug Something isn't working X SMALL Less than 1 day
#600 opened Jul 18, 2024 by eecavanna
@sujaypatil96
berkeley: json:submit dagit failures berkeley-schema Related to making the Runtime work with the Berkeley schema bug Something isn't working
#595 opened Jul 17, 2024 by aclum
berkeley: dagit claim_and_run_apply_changesheet_jobs failures due to authentication failure berkeley-schema Related to making the Runtime work with the Berkeley schema bug Something isn't working
#594 opened Jul 16, 2024 by aclum
berkeley: Update activity related endpoints berkeley-schema Related to making the Runtime work with the Berkeley schema
#593 opened Jul 16, 2024 by aclum
5 tasks
@PeopleMakeCulture @eecavanna
berkeley: Validate or remove _translate_omics_processing function (in neon_surface_water_translator.py) that returned an nmdc.OmicsProcessing berkeley-schema Related to making the Runtime work with the Berkeley schema help wanted Extra attention is needed
#589 opened Jul 11, 2024 by eecavanna
berkeley: Validate or remove _translate_omics_processing function (in neon_benthic_translator.py) that returned an nmdc.OmicsProcessing berkeley-schema Related to making the Runtime work with the Berkeley schema help wanted Extra attention is needed
#588 opened Jul 11, 2024 by eecavanna
berkeley: Validate or remove _translate_omics_processing function (in neon_soil_translator.py) that returned an nmdc.OmicsProcessing berkeley-schema Related to making the Runtime work with the Berkeley schema help wanted Extra attention is needed
#587 opened Jul 11, 2024 by eecavanna
berkeley: Validate or remove _translate_omics_processing function (in gold_translator.py) that returned an nmdc.OmicsProcessing berkeley-schema Related to making the Runtime work with the Berkeley schema help wanted Extra attention is needed
#586 opened Jul 11, 2024 by eecavanna
Update the Runtime to work with the Berkeley schema (meta issue) berkeley-schema Related to making the Runtime work with the Berkeley schema help wanted Extra attention is needed LARGE 7-10 days schema change
#577 opened Jul 4, 2024 by eecavanna
5 of 12 tasks
1
@eecavanna
1
False positive type errors from ref integrity code bug Something isn't working
#576 opened Jul 1, 2024 by aclum
@sierra-moxon @PeopleMakeCulture
8
Standardize utils for mapping schema classes to mongo collections
#569 opened Jun 20, 2024 by PeopleMakeCulture
@dwinston @PeopleMakeCulture @eecavanna
3
Include functional_annotation_agg & metap_gene_function_agg collections (not defined in the schema) to referential integrity check
#568 opened Jun 20, 2024 by PeopleMakeCulture
@PeopleMakeCulture
Replace custom build system with Poetry backlog Not assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized. enhancement New feature or request
#563 opened Jun 19, 2024 by eecavanna
2
Add INSDC identifiers to NMDC studies on insdc_bioproject_identifiers slot
#557 opened Jun 14, 2024 by sujaypatil96
nmdc-runtime should use materalized_pattern version of json schema
#552 opened Jun 12, 2024 by aclum
@PeopleMakeCulture
2
Implementation of API endpoint for NMDC Database roll-up backlog Not assigned to a sprint or not completed during a planned sprint. Needs to be reprioritized.
#551 opened Jun 7, 2024 by sujaypatil96
@sujaypatil96
1
Inference of environmental package based on MIxS environmental context terms
#547 opened Jun 5, 2024 by sujaypatil96
Prep JAWS Presentation
#546 opened Jun 3, 2024 by PeopleMakeCulture
@dwinston @PeopleMakeCulture
Two GitHub Actions workflows have the same name: "Python application" cleanup 🧹 Related to cleaning up code, documentation, etc. X SMALL Less than 1 day
#544 opened May 30, 2024 by eecavanna
2 tasks
[Placeholder] Sync Runtime Auth with Data Portal Changes
#540 opened May 29, 2024 by PeopleMakeCulture
@PeopleMakeCulture
1
Consider deleting tmp.json file from code base cleanup 🧹 Related to cleaning up code, documentation, etc. decision needed tag issues that need to be unblocked by decisions X SMALL Less than 1 day
#536 opened May 25, 2024 by eecavanna
@dwinston
Consider deleting github_secrets_to_dotenv.sh file from code base cleanup 🧹 Related to cleaning up code, documentation, etc. decision needed tag issues that need to be unblocked by decisions X SMALL Less than 1 day
#535 opened May 25, 2024 by eecavanna
@dwinston
Consider deleting guix-manifest.scm file from code base cleanup 🧹 Related to cleaning up code, documentation, etc. decision needed tag issues that need to be unblocked by decisions X SMALL Less than 1 day
#534 opened May 25, 2024 by eecavanna
response to a request for a data object that a curator has determined should be removed decision needed tag issues that need to be unblocked by decisions
#530 opened May 22, 2024 by dwinston
@dwinston @PeopleMakeCulture
4
Mint & Validate versioned WorkflowExecutionActivity nmdc: IDs for workflows of same type and OmicsProcessing
#529 opened May 21, 2024 by aclum
@dwinston @PeopleMakeCulture
7
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