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Add logic for Napa-compliance updating of Study, BioSamples and OmicsProcessing to re_id_tool.py #66

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Tracked by #1807
mbthornton-lbl opened this issue Mar 5, 2024 · 1 comment · Fixed by #85
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@mbthornton-lbl
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mbthornton-lbl commented Mar 5, 2024

Bring over the Re-ID-ing logic from @aclum

https://github.com/microbiomedata/nmdc-schema/blob/napa_compliance/nmdc_schema

and incorporate it as Click command(s) in re_id_tool.py

New Study ID's have been created manually, so we want to make sure to use them

We will need:

  • Update Study: To Napa and schema version 10 standards
  • Update BioSamples
  • Update OmicsProcessing
@ssarrafan
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@mbthornton-lbl should this be in the next sprint or not?

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