R3-R4-conversion (#356)

* add diff support * update * update folders * update tempaltes * update tests * fix comments * update tests * fix comments * fix comments * add comments * update tests * add processor * add nesting too deep tests * update * merge * merge * update * fix comments * remove useless template
microsoft · Apr 8, 2022 · 38cf57a · 38cf57a
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diff --git a/data/SampleData/Stu3/CapabilityStatement.json b/data/SampleData/Stu3/CapabilityStatement.json
@@ -0,0 +1,223 @@
+{
+  "resourceType": "CapabilityStatement",
+  "id": "example",
+  "text": {
+    "status": "generated",
+    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n\t\t\t<p>The EHR Server supports the following transactions for the resource Person: read, vread, \n        update, history, search(name,gender), create and updates.</p>\n\t\t\t<p>The EHR System supports the following message: admin-notify::Person.</p>\n\t\t\t<p>The EHR Application has a \n        <a href=\"http://fhir.hl7.org/base/Profilebc054d23-75e1-4dc6-aca5-838b6b1ac81d/_history/b5fdd9fc-b021-4ea1-911a-721a60663796\">general document profile</a>.\n      </p>\n\t\t</div>"
+  },
+  "url": "urn:uuid:68D043B5-9ECF-4559-A57A-396E0D452311",
+  "version": "20130510",
+  "name": "ACME-EHR",
+  "title": "ACME EHR capability statement",
+  "status": "draft",
+  "experimental": true,
+  "date": "2012-01-04",
+  "publisher": "ACME Corporation",
+  "contact": [
+    {
+      "name": "System Administrator",
+      "telecom": [
+        {
+          "system": "email",
+          "value": "wile@acme.org"
+        }
+      ]
+    }
+  ],
+  "description": "This is the FHIR capability statement for the main EHR at ACME for the private interface - it does not describe the public interface",
+  "useContext": [
+    {
+      "code": {
+        "system": "http://hl7.org/fhir/usage-context-type",
+        "code": "focus"
+      },
+      "valueCodeableConcept": {
+        "coding": [
+          {
+            "system": "http://hl7.org/fhir/variant-state",
+            "code": "positive"
+          }
+        ]
+      }
+    }
+  ],
+  "jurisdiction": [
+    {
+      "coding": [
+        {
+          "system": "urn:iso:std:iso:3166",
+          "code": "US",
+          "display": "United States of America (the)"
+        }
+      ]
+    }
+  ],
+  "purpose": "Main EHR capability statement, published for contracting and operational support",
+  "copyright": "Copyright © Acme Healthcare and GoodCorp EHR Systems",
+  "kind": "instance",
+  "instantiates": [
+    "http://ihe.org/fhir/CapabilityStatement/pixm-client"
+  ],
+  "software": {
+    "name": "EHR",
+    "version": "0.00.020.2134",
+    "releaseDate": "2012-01-04"
+  },
+  "implementation": {
+    "description": "main EHR at ACME",
+    "url": "http://10.2.3.4/fhir"
+  },
+  "fhirVersion": "1.0.0",
+  "acceptUnknown": "both",
+  "format": [
+    "xml",
+    "json"
+  ],
+  "patchFormat": [
+    "application/xml-patch+xml",
+    "application/json-patch+json"
+  ],
+  "implementationGuide": [
+    "http://hl7.org/fhir/us/lab"
+  ],
+  "profile": [
+    {
+      "reference": "http://hl7.org/fhir/us/core/StructureDefinition/familymemberhistory-genetic"
+    }
+  ],
+  "rest": [
+    {
+      "mode": "server",
+      "documentation": "Main FHIR endpoint for acem health",
+      "security": {
+        "cors": true,
+        "service": [
+          {
+            "coding": [
+              {
+                "system": "http://hl7.org/fhir/restful-security-service",
+                "code": "SMART-on-FHIR"
+              }
+            ]
+          }
+        ],
+        "description": "See Smart on FHIR documentation",
+        "certificate": [
+          {
+            "type": "application/jwt",
+            "blob": "IHRoaXMgYmxvYiBpcyBub3QgdmFsaWQ="
+          }
+        ]
+      },
+      "resource": [
+        {
+          "type": "Patient",
+          "profile": {
+            "reference": "http://fhir.hl7.org/base/StructureDefinition/7896271d-57f6-4231-89dc-dcc91eab2416"
+          },
+          "documentation": "This server does not let the clients create identities.",
+          "interaction": [
+            {
+              "code": "read"
+            },
+            {
+              "code": "vread",
+              "documentation": "Only supported for patient records since 12-Dec 2012"
+            },
+            {
+              "code": "update"
+            },
+            {
+              "code": "history-instance"
+            },
+            {
+              "code": "create"
+            },
+            {
+              "code": "history-type"
+            }
+          ],
+          "versioning": "versioned-update",
+          "readHistory": true,
+          "updateCreate": false,
+          "conditionalCreate": true,
+          "conditionalRead": "full-support",
+          "conditionalUpdate": false,
+          "conditionalDelete": "not-supported",
+          "searchInclude": [
+            "Organization"
+          ],
+          "searchRevInclude": [
+            "Person"
+          ],
+          "searchParam": [
+            {
+              "name": "identifier",
+              "definition": "http://hl7.org/fhir/SearchParameter/Patient-identifier",
+              "type": "token",
+              "documentation": "Only supports search by institution MRN"
+            },
+            {
+              "name": "general-practitioner",
+              "definition": "http://hl7.org/fhir/SearchParameter/Patient-general-practitioner",
+              "type": "reference"
+            }
+          ]
+        }
+      ],
+      "interaction": [
+        {
+          "code": "transaction"
+        },
+        {
+          "code": "history-system"
+        }
+      ],
+      "compartment": [
+        "http://hl7.org/fhir/CompartmentDefinition/patient"
+      ]
+    }
+  ],
+  "messaging": [
+    {
+      "endpoint": [
+        {
+          "protocol": {
+            "system": "http://hl7.org/fhir/message-transport",
+            "code": "mllp"
+          },
+          "address": "mllp:10.1.1.10:9234"
+        }
+      ],
+      "reliableCache": 30,
+      "documentation": "ADT A08 equivalent for external system notifications",
+      "event": [
+        {
+          "code": {
+            "system": "http://hl7.org/fhir/message-events",
+            "code": "admin-notify"
+          },
+          "category": "Consequence",
+          "mode": "receiver",
+          "focus": "Patient",
+          "request": {
+            "reference": "StructureDefinition/Patient"
+          },
+          "response": {
+            "reference": "StructureDefinition/MessageHeader"
+          },
+          "documentation": "Notification of an update to a patient resource. changing the links is not supported"
+        }
+      ]
+    }
+  ],
+  "document": [
+    {
+      "mode": "consumer",
+      "documentation": "Basic rules for all documents in the EHR system",
+      "profile": {
+        "reference": "http://fhir.hl7.org/base/Profilebc054d23-75e1-4dc6-aca5-838b6b1ac81d/_history/b5fdd9fc-b021-4ea1-911a-721a60663796"
+      }
+    }
+  ]
+}
diff --git a/data/SampleData/Stu3/CodeSystem.json b/data/SampleData/Stu3/CodeSystem.json
@@ -0,0 +1,82 @@
+{
+  "resourceType": "CodeSystem",
+  "id": "example",
+  "meta": {
+    "profile": [
+      "http://hl7.org/fhir/StructureDefinition/shareablecodesystem"
+    ]
+  },
+  "text": {
+    "status": "generated",
+    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\">\n      <p>CodeSystem &quot;ACME Codes for Cholesterol&quot;: This is an example code system that includes \n        all the codes for serum cholesterol defined by ACME inc.</p>\n      <p>Developed by: FHIR project team (example)</p>\n      <p>Published for testing on 28-Jan 2016</p>\n      <p>This code system defines all the ACME codes for serum cholesterol:</p>\n      <table class=\"grid\">\n        <tr>\n          <td>\n            <b>Code</b>\n          </td>\n          <td>\n            <b>Display</b>\n          </td>\n          <td>\n            <b>Definition</b>\n          </td>\n        </tr>\n        <tr>\n          <td>chol-mmol</td>\n          <td>SChol (mmol/L)</td>\n          <td>Serum Cholesterol, in mmol/L</td>\n        </tr>\n        <tr>\n          <td>chol-mass</td>\n          <td>SChol (mg/L)</td>\n          <td>Serum Cholesterol, in mg/L</td>\n        </tr>\n        <tr>\n          <td>chol</td>\n          <td>SChol</td>\n          <td>Serum Cholesterol</td>\n        </tr>\n      </table>\n    </div>"
+  },
+  "url": "http://hl7.org/fhir/CodeSystem/example",
+  "identifier": {
+    "system": "http://acme.com/identifiers/codesystems",
+    "value": "internal-cholesterol-inl"
+  },
+  "version": "20160128",
+  "name": "ACME Codes for Cholesterol in Serum/Plasma",
+  "status": "draft",
+  "experimental": true,
+  "date": "2016-01-28",
+  "publisher": "HL7 International",
+  "contact": [
+    {
+      "name": "FHIR project team",
+      "telecom": [
+        {
+          "system": "url",
+          "value": "http://hl7.org/fhir"
+        }
+      ]
+    }
+  ],
+  "description": "This is an example code system that includes all the ACME codes for serum/plasma cholesterol from v2.36.",
+  "caseSensitive": true,
+  "content": "complete",
+  "concept": [
+    {
+      "code": "chol-mmol",
+      "display": "SChol (mmol/L)",
+      "definition": "Serum Cholesterol, in mmol/L",
+      "designation": [
+        {
+          "use": {
+            "system": "http://acme.com/config/fhir/codesystems/internal",
+            "code": "internal-label"
+          },
+          "value": "From ACME POC Testing"
+        }
+      ]
+    },
+    {
+      "code": "chol-mass",
+      "display": "SChol (mg/L)",
+      "definition": "Serum Cholesterol, in mg/L",
+      "designation": [
+        {
+          "use": {
+            "system": "http://acme.com/config/fhir/codesystems/internal",
+            "code": "internal-label"
+          },
+          "value": "From Paragon Labs"
+        }
+      ]
+    },
+    {
+      "code": "chol",
+      "display": "SChol",
+      "definition": "Serum Cholesterol",
+      "designation": [
+        {
+          "use": {
+            "system": "http://acme.com/config/fhir/codesystems/internal",
+            "code": "internal-label"
+          },
+          "value": "Obdurate Labs uses this with both kinds of units..."
+        }
+      ]
+    }
+  ]
+}
diff --git a/data/SampleData/Stu3/Observation.json b/data/SampleData/Stu3/Observation.json
@@ -0,0 +1,67 @@
+{
+  "resourceType": "Observation",
+  "id": "example-TPMT-haplotype-two",
+  "text": {
+    "status": "generated",
+    "div": "<div xmlns=\"http://www.w3.org/1999/xhtml\"><p><b>Generated Narrative with Details</b></p><p><b>id</b>: example-TPMT-haplotype-two</p><p><b>status</b>: unknown</p><p><b>code</b>: Haplotype Call <span>(Details : {SNOMED CT code '363779003' = '363779003', given as 'Genotype determination'})</span></p><p><b>subject</b>: <a>E***********</a></p><p><b>issued</b>: 03/04/2013 3:30:10 PM</p><p><b>value</b>: *4 <span>(Details : {http://pharmakb.org code 'PA166128353' = 'PA166128353', given as '*4'})</span></p><h3>Relateds</h3><table><tr><td>-</td><td><b>Type</b></td><td><b>Target</b></td></tr><tr><td>*</td><td>derived-from</td><td><a>Sequence/example-TPMT-two</a></td></tr></table></div>"
+  },
+  "extension": [
+    {
+      "url": "http://hl7.org/fhir/StructureDefinition/observation-geneticsGene",
+      "valueCodeableConcept": {
+        "coding": [
+          {
+            "system": "http://www.genenames.org",
+            "code": "12014",
+            "display": "TPMT"
+          }
+        ]
+      }
+    }
+  ],
+  "status": "unknown",
+  "code": {
+    "coding": [
+      {
+        "system": "http://snomed.info",
+        "code": "363779003",
+        "display": "Genotype determination"
+      }
+    ],
+    "text": "Haplotype Call"
+  },
+  "subject": {
+    "reference": "Patient/example",
+    "display": "E***********"
+  },
+  "issued": "2013-04-03T15:30:10+01:00",
+  "valueCodeableConcept": {
+    "coding": [
+      {
+        "system": "http://pharmakb.org",
+        "code": "PA166128353",
+        "display": "*4"
+      }
+    ]
+  },
+  "related": [
+    {
+      "type": "derived-from",
+      "target": {
+        "reference": "Sequence/example-TPMT-two"
+      }
+    },
+    {
+      "type": "sequel-to",
+      "target": {
+        "reference": "Sequence/example-TPMT-two"
+      }
+    },
+    {
+      "type": "interfered-by",
+      "target": {
+        "reference": "Sequence/example-TPMT-two"
+      }
+    }
+  ]
+}