Segmentation fault: 11 with lightGBM 3.3.0 in Mac Big Sur

[jrzaurin]

Description

Simply, a fresh install in my system won't run fit throwing a Segmentation fault: 11 error.

Not sure is a bug or simply my installation and/or laptop

Reproducible example

>>> import numpy as np
>>> import lightgbm as lgb
>>> x = np.random.rand(100, 5)
>>> y = np.random.choice(2, 100)
>>> model = lgb.LGBMClassifier()
>>> model.fit(x, y)
Segmentation fault: 11

Environment info

OS: mac OS Big Sur 11.6
python versions: 3.7.9, 3.8.9 and 3.9.5 (environments created via pyenv virtualenv 3.9.5 lgb_test_py39 for example. The env has installed only LightGBM

I recently updated OS and run brew updgrade so just in case it helps:

brew info libomp
libomp: stable 13.0.0 (bottled)
LLVM's OpenMP runtime library
https://openmp.llvm.org/
/usr/local/Cellar/libomp/13.0.0 (9 files, 1.6MB) *
  Poured from bottle on 2021-10-04 at 19:41:11
From: https://github.com/Homebrew/homebrew-core/blob/HEAD/Formula/libomp.rb
License: MIT
==> Dependencies
Build: cmake ✔
==> Analytics
install: 127,588 (30 days), 281,902 (90 days), 1,175,119 (365 days)
install-on-request: 15,038 (30 days), 33,932 (90 days), 139,457 (365 days)
build-error: 0 (30 days)

LightGBM version or commit hash:

>>> lgb.__version__
'3.3.0'

Command(s) you used to install LightGBM

pip install lightgbm

[StrikerRUS]

@jrzaurin Hey, thanks for using LightGBM!

Unfortunately, libomp>=12 on macOS contains a bug, and LightGBM is not compatible with it. Please, use one of the following workarounds: #4229 (comment) or #4229 (comment).

[github-actions]

This issue has been automatically locked since there has not been any recent activity since it was closed. To start a new related discussion, open a new issue at https://github.com/microsoft/LightGBM/issues including a reference to this.