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support data compression & delta-encoding of posting lists #297

Merged
merged 28 commits into from
Jun 9, 2022
Merged

support data compression & delta-encoding of posting lists #297

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6583ee5
MVP version of Data compress (#1)
suiguoxin May 20, 2022
f61c390
Support delta-encoding (#2)
suiguoxin May 24, 2022
1003594
support config of compress level (#3)
suiguoxin May 25, 2022
d17a126
integrate zstd with cmake (#4)
suiguoxin May 25, 2022
83efc3f
Bug Fix: wrong listPageCount when listTotalBytes % pageSize==0 (#5)
suiguoxin May 29, 2022
0f33ca3
train & share dictionary (#6)
suiguoxin May 30, 2022
17a2150
rearrange posting list (#7)
suiguoxin May 30, 2022
f502072
config minDictTraingBufferSize and dictBufferCapacity (#8)
suiguoxin May 31, 2022
223bdd3
cmake with local installed zstd (#9)
suiguoxin May 31, 2022
e23174a
refine visual studio config (#10)
suiguoxin May 31, 2022
d6e7f41
parallel for get compressed size (#11)
suiguoxin May 31, 2022
76037b3
fix check truth bug (#12)
suiguoxin Jun 1, 2022
138b8da
change zstd branch (#13)
suiguoxin Jun 1, 2022
161e7a8
remove verbose log in truth analysis; refine dockerfile
suiguoxin Jun 1, 2022
063c847
check rvalue in Compressor.h
suiguoxin Jun 5, 2022
4d692ed
resolve back compatibility by add a search option: WithDataCompressio…
suiguoxin Jun 7, 2022
aaa1fbe
remove redundant configs, change head info format only when compressi…
suiguoxin Jun 8, 2022
4731e91
reuse buffer when decompression
suiguoxin Jun 8, 2022
9bf097a
remove exit(1) from search index
suiguoxin Jun 8, 2022
bbe8a6d
bug fix: reuse compression buffer in workspace
suiguoxin Jun 8, 2022
607f8c7
code refine
suiguoxin Jun 8, 2022
0dc7cdb
Merge branch 'main' into fb-data-compress
PhilipBAdams Jun 8, 2022
7645ff8
optimize mem usage
suiguoxin Jun 9, 2022
1e4c62d
Merge branch 'fb-data-compress' of github.com:suiguoxin/SPTAG into fb…
suiguoxin Jun 9, 2022
3ad6a10
replace vcpkg zstd with nuget
suiguoxin Jun 9, 2022
7a7f4bc
config issue
suiguoxin Jun 9, 2022
386d5dc
fix solution build issue
suiguoxin Jun 9, 2022
c9c35fd
Merge branch 'main' into fb-data-compress
suiguoxin Jun 9, 2022
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4 changes: 4 additions & 0 deletions .gitmodules
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@@ -0,0 +1,4 @@
[submodule "ThirdParty/zstd"]
path = ThirdParty/zstd
url = https://github.com/facebook/zstd
branch = release
2 changes: 2 additions & 0 deletions AnnService/Aggregator.vcxproj
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<Import Project="..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets" Condition="Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" />
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
</ImportGroup>
<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
<PropertyGroup>
Expand All @@ -177,5 +178,6 @@
<Error Condition="!Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets'))" />
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
</Target>
</Project>
6 changes: 4 additions & 2 deletions AnnService/CMakeLists.txt
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Expand Up @@ -2,8 +2,10 @@
# Licensed under the MIT License.

set(AnnService ${PROJECT_SOURCE_DIR}/AnnService)
set(Zstd ${PROJECT_SOURCE_DIR}/ThirdParty/zstd)

include_directories(${AnnService})
include_directories(${Zstd}/lib)

file(GLOB_RECURSE HDR_FILES ${AnnService}/inc/Core/*.h ${AnnService}/inc/Helper/*.h)
file(GLOB_RECURSE SRC_FILES ${AnnService}/src/Core/*.cpp ${AnnService}/src/Helper/*.cpp)
Expand Down Expand Up @@ -32,9 +34,9 @@ if(${CMAKE_CXX_COMPILER_ID} STREQUAL "GNU")
endif()

add_library (SPTAGLib SHARED ${SRC_FILES} ${HDR_FILES})
target_link_libraries (SPTAGLib DistanceUtils)
target_link_libraries (SPTAGLib DistanceUtils libzstd_shared)
add_library (SPTAGLibStatic STATIC ${SRC_FILES} ${HDR_FILES})
target_link_libraries (SPTAGLibStatic DistanceUtils)
target_link_libraries (SPTAGLibStatic DistanceUtils libzstd_static)
if(${CMAKE_CXX_COMPILER_ID} STREQUAL "GNU")
target_compile_options(SPTAGLibStatic PRIVATE -fPIC)
endif()
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2 changes: 2 additions & 0 deletions AnnService/Client.vcxproj
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Expand Up @@ -132,6 +132,7 @@
<Import Project="..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets" Condition="Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" />
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
</ImportGroup>
<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
<PropertyGroup>
Expand All @@ -144,5 +145,6 @@
<Error Condition="!Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets'))" />
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
</Target>
</Project>
8 changes: 8 additions & 0 deletions AnnService/CoreLibrary.vcxproj
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Expand Up @@ -160,6 +160,7 @@
<ClInclude Include="inc\Core\MetadataSet.h" />
<ClInclude Include="inc\Core\SearchQuery.h" />
<ClInclude Include="inc\Core\SearchResult.h" />
<ClInclude Include="inc\Core\SPANN\Compressor.h" />
<ClInclude Include="inc\Core\SPANN\ExtraFullGraphSearcher.h" />
<ClInclude Include="inc\Core\SPANN\IExtraSearcher.h" />
<ClInclude Include="inc\Core\SPANN\Index.h" />
Expand Down Expand Up @@ -219,5 +220,12 @@
</ItemGroup>
<Import Project="$(VCTargetsPath)\Microsoft.Cpp.targets" />
<ImportGroup Label="ExtensionTargets">
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
</ImportGroup>
<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
<PropertyGroup>
<ErrorText>This project references NuGet package(s) that are missing on this computer. Use NuGet Package Restore to download them. For more information, see http://go.microsoft.com/fwlink/?LinkID=322105. The missing file is {0}.</ErrorText>
</PropertyGroup>
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
</Target>
</Project>
3 changes: 3 additions & 0 deletions AnnService/CoreLibrary.vcxproj.filters
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Expand Up @@ -214,6 +214,9 @@
<ClInclude Include="inc\Core\Common\OPQQuantizer.h">
<Filter>Header Files\Core\Common</Filter>
</ClInclude>
<ClInclude Include="inc\Core\SPANN\Compressor.h">
<Filter>Header Files\Core\SPANN</Filter>
</ClInclude>
</ItemGroup>
<ItemGroup>
<ClCompile Include="src\Core\VectorIndex.cpp">
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2 changes: 2 additions & 0 deletions AnnService/IndexBuilder.vcxproj
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Expand Up @@ -155,6 +155,7 @@
<Import Project="..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets" Condition="Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" />
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
</ImportGroup>
<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
<PropertyGroup>
Expand All @@ -167,5 +168,6 @@
<Error Condition="!Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets'))" />
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
</Target>
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2 changes: 2 additions & 0 deletions AnnService/IndexSearcher.vcxproj
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Expand Up @@ -156,6 +156,7 @@
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_regex-vc142.1.72.0.0\build\boost_regex-vc142.targets" Condition="Exists('..\packages\boost_regex-vc142.1.72.0.0\build\boost_regex-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
</ImportGroup>
<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
<PropertyGroup>
Expand All @@ -168,5 +169,6 @@
<Error Condition="!Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_regex-vc142.1.72.0.0\build\boost_regex-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_regex-vc142.1.72.0.0\build\boost_regex-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets'))" />
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
</Target>
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2 changes: 2 additions & 0 deletions AnnService/Quantizer.vcxproj
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Expand Up @@ -171,6 +171,7 @@
<Import Project="..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets" Condition="Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" />
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
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<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
<PropertyGroup>
Expand All @@ -183,5 +184,6 @@
<Error Condition="!Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets'))" />
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
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7 changes: 6 additions & 1 deletion AnnService/SSDServing.vcxproj
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@@ -1,4 +1,4 @@
<?xml version="1.0" encoding="utf-8"?>
<?xml version="1.0" encoding="utf-8"?>
<Project DefaultTargets="Build" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
<ItemGroup Label="ProjectConfigurations">
<ProjectConfiguration Include="Debug|Win32">
Expand Down Expand Up @@ -27,6 +27,9 @@
<ClInclude Include="inc\SSDServing\SSDIndex.h" />
<ClInclude Include="inc\SSDServing\Utils.h" />
</ItemGroup>
<ItemGroup>
<None Include="packages.config" />
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<PropertyGroup Label="Globals">
<VCProjectVersion>15.0</VCProjectVersion>
<ProjectGuid>{217B42B7-8F2B-4323-804C-08992CA2F65E}</ProjectGuid>
Expand Down Expand Up @@ -177,6 +180,7 @@
<Import Project="..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets" Condition="Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" />
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
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<Target Name="EnsureNuGetPackageBuildImports" BeforeTargets="PrepareForBuild">
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Expand All @@ -189,5 +193,6 @@
<Error Condition="!Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets'))" />
<Error Condition="!Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets'))" />
<Error Condition="!Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets'))" />
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3 changes: 3 additions & 0 deletions AnnService/SSDServing.vcxproj.filters
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<Filter>Source Files</Filter>
</ClCompile>
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<None Include="packages.config" />
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2 changes: 2 additions & 0 deletions AnnService/Server.vcxproj
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Expand Up @@ -140,6 +140,7 @@
<Import Project="..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets" Condition="Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" />
<Import Project="..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets" Condition="Exists('..\packages\boost_thread-vc142.1.72.0.0\build\boost_thread-vc142.targets')" />
<Import Project="..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets" Condition="Exists('..\packages\boost_wserialization-vc142.1.72.0.0\build\boost_wserialization-vc142.targets')" />
<Import Project="..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets" Condition="Exists('..\packages\Zstandard.dyn.x64.1.4.0\build\native\Zstandard.dyn.x64.targets')" />
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Expand All @@ -152,5 +153,6 @@
<Error Condition="!Exists('..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets')" Text="$([System.String]::Format('$(ErrorText)', '..\packages\boost_system-vc142.1.72.0.0\build\boost_system-vc142.targets'))" />
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