ENH: Add utils to upload annotations to the Digital Slide Archive #373
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dccastro
requested changes
May 23, 2022
harshita-s
requested changes
May 24, 2022
Fix annotation class and add third dimension Add support for passing API URL and key programmatically Add method to get item ID from folder and file names Add some typing hints Add convenience functions Stop rescaling by default Add script to upload test outputs to the DSA Add option to limit the number of processed slides Add temporary argument --folder-name Use tqdm to log errors for now Update version of girder-client Refactor utils by adding a RunOutputs class Add support to choose the search mode Read tile size from hparams YAML Infer tile size from outputs CSV Fix little bugs Use latest version of Girder client Update Girder utils to use left, top, right, bottom Modify help message Remove unused method to get hparams YAML Remove default URL Use double quotes for strings Remove unused method to open YAML files Remove unused argument Undo changes to preprocessing module
harshita-s
approved these changes
May 27, 2022
dccastro
approved these changes
May 27, 2022
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Thanks for reviewing, @dccastro and @harshita-s! |
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