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Sorting repositories when searching by Uri to ensure nested repositor…
…ies are found if appropriate.
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poor commit message, should have been:
Sort repositories when searching by URI
When ignoring a file, it was added to the top level .gitignore, rather than the one for the submodule.
Since this is only an issue for nested git repositories, it might be better to do the sort after adding submodule repositories in scanForSubmodules, or just always keep it in order.