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hidden markov models in haskell
Haskell C
branch: master

Merge pull request #10 from thielema/avoid-warnings

add type signatures to top-level functions
latest commit e0d5601ea2
@mikeizbicki authored
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Data Merge branch 'master' into avoid-warnings
dist removed base version numbers due to bug report
.hmm.cabal.2.swp removed base version numbers due to bug report
.hmm.cabal.swp removed base version numbers due to bug report
BioHMM.hs Added viterbi algorithm, more performance tests, more ways to create …
HMMPerf.hs Added viterbi algorithm, more performance tests, more ways to create …
HMMTest.hs BW now does ~30000bp/min. Began test suite.
LICENSE Updated config so hackage would compile
OldHMM.hs Added performance testing and reorganized
README Ready for first release
Setup.hs
hmm.cabal Merge pull request #5 from thielema/cabal-hyperlink-tutorial
test.hs Added initial HMM stuff

README

This is a Hidden Markov Model (HMM) library for Haskell.  It is in the hackage repository already, and that's probably the version that you want to use.  Try installing it with the command:

> cabal install hmm

The easiest way to learn to use the library is by following the tutorial at: http://izbicki.me/blog/using-hmms-in-haskell-for-bioinformatics
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