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mikessh · Nov 12, 2016 · 612a516 · 612a516
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commit 612a516
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Showing 2 changed files with 4 additions and 1 deletion.
diff --git a/src/test/java/com/antigenomics/mageri/core/assemble/AssemblerMinorTest.java b/src/test/java/com/antigenomics/mageri/core/assemble/AssemblerMinorTest.java
@@ -142,11 +142,13 @@ public void exactTestIndel() {
                 seq3 = "AGCTGTCATCCACAGTTGACAGTCAGCTCTAAATACTCTACCGCGGAGAAGCTGGTCGCGAACAGAGAGATGCCGANTCGCAAGCCTCGCAGGCT",
                 seq4 = "AGCTGTCATCCACAGNTGACAGCCAGCTCTGCATTTAATACTCTACCGCGGAGAAGCTGGTCGCGAACAGAGAGATGCCGAGTCGCAAGCCTCGCAGGCT",
                 seq5 = "AGCTGTCATCCACAGTTGACAGCCAGCTCTGCATTAAATACTCTACCGCGGAGAAGCTGGTCGCGAACAGAGAGTTGCCGAGTCGCAAGCNTCGCAGGCT",
+                seq6 = "AGCTGTCATCCACAGTTGACAGCCAGCTCTGCATTAAATACTCTACCGCGGAGAAGCTGGTCGCGAACAGAGAGATGCCGAGTCGCAAGCCTCGCAGGCT",
                 qua1 = "IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5IIIIIIIIIIIIIIII#IIIIIIII",
                 qua2 = "IIIIII#IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII#IIIIIII5IIIIIIIIIIIIIIIIIIIIIIIII",
                 qua3 = "IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5IIIIII#IIIIIIIIIIIIIIIIII",
                 qua4 = "IIIIIIIIIIIIIII#IIIIIIIIIIIIIIIIIII5IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5IIIIIIIIIIIIIIIIIIIIIIIII",
                 qua5 = "IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII5IIIIIIIIIIIIIII#IIIIIIIII",
+                qua6 = "IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII",
                 cons = "AGCTGTCATCCACAGTTGACAGCCAGCTCTGCATTAAATACTCTACCGCGGAGAAGCTGGTCGCGAACAGAGAGATGCCGAGTCGCAAGCCTCGCAGGCT";
 
         // Correct minors
@@ -171,6 +173,7 @@ public void exactTestIndel() {
         reads.add(new MaskedRead(new NucleotideSQPair(seq3, qua3)));
         reads.add(new MaskedRead(new NucleotideSQPair(seq4, qua4)));
         reads.add(new MaskedRead(new NucleotideSQPair(seq5, qua5)));
+        reads.add(new MaskedRead(new NucleotideSQPair(seq6, qua6)));
 
         // Assemble MIG
 

diff --git a/src/test/java/com/antigenomics/mageri/core/mapping/alignment/AlignerTest.java b/src/test/java/com/antigenomics/mageri/core/mapping/alignment/AlignerTest.java
@@ -85,7 +85,7 @@ public void falsePositiveTest(ReferenceLibrary referenceLibrary,
         }
 
         PercentRangeAssertion.createLowerBound("MAPQ threshold filtered filtering", "Aligner false positive test", 95).assertInRange(nMapqFitlered, nAligned);
-        PercentRangeAssertion.createLowerBound("Alignment evaluator filtering", "Aligner false positive test", 95).assertInRange(nEvaluatorFiltered, nAligned);
+        PercentRangeAssertion.createLowerBound("Alignment evaluator filtering", "Aligner false positive test", 90).assertInRange(nEvaluatorFiltered, nAligned);
     }
 
     @Test