Feature: extract aggregated reads for each clone #8
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PoslavskySV
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dbolotin
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Conflicts: src/main/java/com/milaboratory/mixcr/cli/Main.java
dbolotin
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dbolotin
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* repseqio upgrade. * wip * wip * First tests. * Wip * Test2 * Aggregator for diversity metrics * wip overlaps * wip * WIP * wip / towards real postanalysis run * wip * wip * wip * wip downsampling * downsampling * wip * wip postanalysis refactoring * wip postanalysis - something working * wip * mode json stuff * wip * wip * wip * wip * wip * wip * initial * fixes * fix isotype usage * Spectratype PA * wip * wip * wip * wip * small fix in analyze --json-report * fix ic tests * Overlap (#8) * Something works. * Test ignore. * UnIgnore integration test. * Done+- * wip * wip * HierarchyWIP * minor / to remove * wip * fix in cli * wip * Hierarchical clustering (#9) * Added ability to override preprocessor in characteristic * wip * Environmental variable to control repseqio cache folder path. * RepseqIO upgrade. * fixes * wip * CDR3 spectratype summary * Repseqio upgrade. (#10) * Types. * fix clustering * - Clustering toString fix - Fixed no top node * wip * wip * fix for spaces in file names Co-authored-by: Stanislav Poslavsky <stvlpos@mail.ru> Co-authored-by: Mark Izraelson <mizraelson@gmail.com>
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