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output file:There is no result in the output file, it is blank #73

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yangwukaidi opened this issue May 24, 2023 · 4 comments
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@yangwukaidi
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Hi.
I have encountered a tricky problem when running the Dquartets of this software, that is, the output file is incomplete.
I have 118 individuals, divided into four groups.
SETS.txt:
1684917751117
VCF:
1684917873640
The command line as follows:
./Build/Dsuite Dquartets 0327.all.LDfilter.new.vcf SETS.txt
But, the contents of the output files are as follows:

SETS_quartets_BBAA.txt
P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA
SETS_quartets_combine.txt
HNHZ QBZ YZ 489483 542000 467119 75223.6 -16460.8 40546 150106 5909.82 93048.4
SETS_quartets_combine_stderr.txt
-0.0873817,-0.10146,-0.06144,-0.0810196,-0.0457916,-0.0574427,-0.0577613,-0.0717437,-0.0698439,-0.0957624,-0.0655952,-0.0784896,-0.0841272,-0.0634347,-0.0640111,-0.0757899, ...
SETS_quartets_Dmin.txt
P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA

How can I solve this problem?
Looking forward to your reply!

@yangwukaidi
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Sorry, I should add that the following is also returned after the command is run:
1684918493730

@yangwukaidi
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I tried using the sample data you provided, and the output file remains the same.
I still can't figure out what went wrong.

@wuyh0328
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Excuse me, I also encountered the same problem. Have you solved your problem?

@yangwukaidi
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I haven't solved the problem yet. Do you have a solution now?

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