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Hi.
I have encountered a tricky problem when running the Dquartets of this software, that is, the output file is incomplete.
I have 118 individuals, divided into four groups.
SETS.txt:
VCF:
The command line as follows:
./Build/Dsuite Dquartets 0327.all.LDfilter.new.vcf SETS.txt
But, the contents of the output files are as follows:
Hi.
![1684917751117](https://private-user-images.githubusercontent.com/127917612/240540789-9c35ffc7-f676-4558-9597-2e1f11fb3acf.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjQ0MDU4NDAsIm5iZiI6MTcyNDQwNTU0MCwicGF0aCI6Ii8xMjc5MTc2MTIvMjQwNTQwNzg5LTljMzVmZmM3LWY2NzYtNDU1OC05NTk3LTJlMWYxMWZiM2FjZi5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODIzJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgyM1QwOTMyMjBaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT00YjliMDc2ZWFjZDJjMzJkY2QxZWM3MjcxYjU3NjlmNGYwMDc2NjBmZTc3MTk4NGE0NmQzOGI1ZTdhY2VlODAwJlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.FW191c3Ftx04gLSipMR1Hh87_OqJHfrAU8p5NjlpLjg)
![1684917873640](https://private-user-images.githubusercontent.com/127917612/240541426-2fe52b36-1dec-4672-bb73-99fb7fa127a0.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MjQ0MDU4NDAsIm5iZiI6MTcyNDQwNTU0MCwicGF0aCI6Ii8xMjc5MTc2MTIvMjQwNTQxNDI2LTJmZTUyYjM2LTFkZWMtNDY3Mi1iYjczLTk5ZmI3ZmExMjdhMC5wbmc_WC1BbXotQWxnb3JpdGhtPUFXUzQtSE1BQy1TSEEyNTYmWC1BbXotQ3JlZGVudGlhbD1BS0lBVkNPRFlMU0E1M1BRSzRaQSUyRjIwMjQwODIzJTJGdXMtZWFzdC0xJTJGczMlMkZhd3M0X3JlcXVlc3QmWC1BbXotRGF0ZT0yMDI0MDgyM1QwOTMyMjBaJlgtQW16LUV4cGlyZXM9MzAwJlgtQW16LVNpZ25hdHVyZT1iMmE5NjRjOWU1NGVhMzhmMzA5NWE3MTFhYWI0ZmM0MWE4MDcyZjM4OTQ5ZDZlYTdjNzJhYTkyZWQ1MjdjOTAyJlgtQW16LVNpZ25lZEhlYWRlcnM9aG9zdCZhY3Rvcl9pZD0wJmtleV9pZD0wJnJlcG9faWQ9MCJ9.K37jA8jIfWhxfEJvXhsZ9Wb9Q-BsnP9PCUqOlw76uFk)
I have encountered a tricky problem when running the Dquartets of this software, that is, the output file is incomplete.
I have 118 individuals, divided into four groups.
SETS.txt:
VCF:
The command line as follows:
./Build/Dsuite Dquartets 0327.all.LDfilter.new.vcf SETS.txt
But, the contents of the output files are as follows:
SETS_quartets_BBAA.txt
P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA
SETS_quartets_combine.txt
HNHZ QBZ YZ 489483 542000 467119 75223.6 -16460.8 40546 150106 5909.82 93048.4
SETS_quartets_combine_stderr.txt
-0.0873817,-0.10146,-0.06144,-0.0810196,-0.0457916,-0.0574427,-0.0577613,-0.0717437,-0.0698439,-0.0957624,-0.0655952,-0.0784896,-0.0841272,-0.0634347,-0.0640111,-0.0757899, ...
SETS_quartets_Dmin.txt
P1 P2 P3 P4 Dstatistic Z-score p-value f4-ratio BBAA ABBA BABA
How can I solve this problem?
Looking forward to your reply!
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