remove executable flag for dot files and update docs

Doxyfile

@@ -874,7 +874,7 @@ RECURSIVE              = YES
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                = ade/test bwd/test
+EXCLUDE                =
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -890,7 +890,7 @@ EXCLUDE_SYMLINKS       = NO
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories for example use the pattern */test/*
 
-EXCLUDE_PATTERNS       =
+EXCLUDE_PATTERNS       = */test */bm
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the

docs/functions.html

@@ -184,6 +184,10 @@ <h3><a id="index_g"></a>- g -</h3><ul>
 
 
 <h3><a id="index_i"></a>- i -</h3><ul>
+<li>is_bijective()
+: <a class="el" href="structade_1_1_coord_map.html#a279588a2420e26c56caf34acb363dddd">ade::CoordMap</a>
+, <a class="el" href="structade_1_1i_coord_map.html#a072c0cba065ec82893e0f5ab3f543298">ade::iCoordMap</a>
+</li>
 <li>iterator
 : <a class="el" href="structade_1_1_shape.html#a724478494d1b325cc5f16e35d3c72172">ade::Shape</a>
 </li>

docs/functions_func.html

@@ -159,6 +159,14 @@ <h3><a id="index_g"></a>- g -</h3><ul>
 </ul>
 
 
+<h3><a id="index_i"></a>- i -</h3><ul>
+<li>is_bijective()
+: <a class="el" href="structade_1_1_coord_map.html#a279588a2420e26c56caf34acb363dddd">ade::CoordMap</a>
+, <a class="el" href="structade_1_1i_coord_map.html#a072c0cba065ec82893e0f5ab3f543298">ade::iCoordMap</a>
+</li>
+</ul>
+
+
 <h3><a id="index_m"></a>- m -</h3><ul>
 <li>map_io()
 : <a class="el" href="structade_1_1_mapped_tensor.html#aae6593688de1372a884bbfdfeb034eeb">ade::MappedTensor</a>
@@ -208,7 +216,7 @@ <h3><a id="index_s"></a>- s -</h3><ul>
 , <a class="el" href="structade_1_1_mapped_tensor.html#a3b67df4b02a504ded28695ddd0e7f6e0">ade::MappedTensor</a>
 </li>
 <li>Shape()
-: <a class="el" href="structade_1_1_shape.html#ab5dd96f6f468e8b17e66e94ec22a9b41">ade::Shape</a>
+: <a class="el" href="structade_1_1_shape.html#a4f965312d8df445063305ea750220b3d">ade::Shape</a>
 </li>
 <li>sum_opcode()
 : <a class="el" href="structage_1_1i_rule_set.html#a5255c4569d7411f5b0f0b58cdc025541">age::iRuleSet</a>
@@ -237,8 +245,8 @@ <h3><a id="index_v"></a>- v -</h3><ul>
 <li>visit()
 : <a class="el" href="structade_1_1_graph_stat.html#ab3376f6cde9c0d483a32ff63632acbc9">ade::GraphStat</a>
 , <a class="el" href="structade_1_1i_traveler.html#a65fd050e7a346733f1eacc59eea299b1">ade::iTraveler</a>
-, <a class="el" href="structade_1_1_path_finder.html#a56fd6fb9ab097926addcbb91e83ad778">ade::PathFinder</a>
-, <a class="el" href="structage_1_1_grader.html#ab7801ce5432bb20048f6e3f6c259bcce">age::Grader</a>
+, <a class="el" href="structade_1_1_path_finder.html#a57a63c9dcad0c13df7af259622c9350b">ade::PathFinder</a>
+, <a class="el" href="structage_1_1_grader.html#a67b5b2024d39f93681b537c71b5d0673">age::Grader</a>
 </li>
 </ul>
 

docs/matops_8hpp.html

@@ -122,6 +122,8 @@
 <tr class="memitem:adf0ae4c17a6835d771a3e8e1502f9ad6"><td class="memItemLeft" align="right" valign="top">std::string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceade.html#adf0ae4c17a6835d771a3e8e1502f9ad6">ade::to_string</a> (const MatrixT &amp;mat)</td></tr>
 <tr class="memdesc:adf0ae4c17a6835d771a3e8e1502f9ad6"><td class="mdescLeft">&#160;</td><td class="mdescRight">Return the string representation of input matrix.  <a href="namespaceade.html#adf0ae4c17a6835d771a3e8e1502f9ad6">More...</a><br /></td></tr>
 <tr class="separator:adf0ae4c17a6835d771a3e8e1502f9ad6"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aecb7b9f5d18655665d51992ee73d3e43"><td class="memItemLeft" align="right" valign="top">double&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceade.html#aecb7b9f5d18655665d51992ee73d3e43">ade::determinant</a> (const MatrixT &amp;mat)</td></tr>
+<tr class="separator:aecb7b9f5d18655665d51992ee73d3e43"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:ad9cbea696e35b2eca835de3a246409d0"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="namespaceade.html#ad9cbea696e35b2eca835de3a246409d0">ade::inverse</a> (MatrixT out, const MatrixT &amp;in)</td></tr>
 <tr class="memdesc:ad9cbea696e35b2eca835de3a246409d0"><td class="mdescLeft">&#160;</td><td class="mdescRight">Inverse in matrix and dump to out matrix.  <a href="namespaceade.html#ad9cbea696e35b2eca835de3a246409d0">More...</a><br /></td></tr>
 <tr class="separator:ad9cbea696e35b2eca835de3a246409d0"><td class="memSeparator" colspan="2">&#160;</td></tr>

docs/matops_8hpp_source.html

@@ -69,13 +69,14 @@
 <div class="title">matops.hpp</div>  </div>
 </div><!--header-->
 <div class="contents">
-<a href="matops_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;</div><div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;cassert&gt;</span></div><div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;cstring&gt;</span></div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;</div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="shape_8hpp.html">ade/shape.hpp</a>&quot;</span></div><div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;</div><div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#ifndef ADE_MATOPS_HPP</span></div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#define ADE_MATOPS_HPP</span></div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;</div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespaceade.html">ade</a></div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;{</div><div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;</div><div class="line"><a name="l00022"></a><span class="lineno"><a class="line" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">   22</a></span>&#160;<span class="keyword">const</span> uint8_t <a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a> = <a class="code" href="namespaceade.html#abe7612b911dddb042aa394cc0125ea69">rank_cap</a> + 1;</div><div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;</div><div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="namespaceade.html#a2510c0d77a622cfaa58a0865d86ce8d5">   25</a></span>&#160;<span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code" href="namespaceade.html#a2510c0d77a622cfaa58a0865d86ce8d5">mat_size</a> = <span class="keyword">sizeof</span>(double) * <a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a> * <a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a>;</div><div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;</div><div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">   28</a></span>&#160;<span class="keyword">using</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a> = <span class="keywordtype">double</span>[<a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a>][<a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a>];</div><div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;</div><div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;std::string <a class="code" href="namespaceade.html#adf0ae4c17a6835d771a3e8e1502f9ad6">to_string</a> (<span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; mat);</div><div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;</div><div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;<span class="keywordtype">void</span> <a class="code" href="namespaceade.html#ad9cbea696e35b2eca835de3a246409d0">inverse</a> (<a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a> out, <span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; in);</div><div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;</div><div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;<span class="keywordtype">void</span> <a class="code" href="namespaceade.html#ab6daf41b04bccd42950ae92db8a0439a">matmul</a> (<a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a> out, <span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; lhs, <span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; rhs);</div><div class="line"><a name="l00038"></a><span class="lineno">   38</span>&#160;</div><div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;}</div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">#endif </span></div><div class="ttc" id="namespaceade_html_abe7612b911dddb042aa394cc0125ea69"><div class="ttname"><a href="namespaceade.html#abe7612b911dddb042aa394cc0125ea69">ade::rank_cap</a></div><div class="ttdeci">const uint8_t rank_cap</div><div class="ttdoc">Number of dimsensions in a shape/coordinate. </div><div class="ttdef"><b>Definition:</b> shape.hpp:34</div></div>
+<a href="matops_8hpp.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;</div><div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="preprocessor">#include &lt;cassert&gt;</span></div><div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="preprocessor">#include &lt;cstring&gt;</span></div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;</div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="shape_8hpp.html">ade/shape.hpp</a>&quot;</span></div><div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;</div><div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="preprocessor">#ifndef ADE_MATOPS_HPP</span></div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="preprocessor">#define ADE_MATOPS_HPP</span></div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;</div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="keyword">namespace </span><a class="code" href="namespaceade.html">ade</a></div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;{</div><div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;</div><div class="line"><a name="l00022"></a><span class="lineno"><a class="line" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">   22</a></span>&#160;<span class="keyword">const</span> uint8_t <a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a> = <a class="code" href="namespaceade.html#abe7612b911dddb042aa394cc0125ea69">rank_cap</a> + 1;</div><div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;</div><div class="line"><a name="l00025"></a><span class="lineno"><a class="line" href="namespaceade.html#a2510c0d77a622cfaa58a0865d86ce8d5">   25</a></span>&#160;<span class="keyword">const</span> <span class="keywordtype">size_t</span> <a class="code" href="namespaceade.html#a2510c0d77a622cfaa58a0865d86ce8d5">mat_size</a> = <span class="keyword">sizeof</span>(double) * <a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a> * <a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a>;</div><div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;</div><div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">   28</a></span>&#160;<span class="keyword">using</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a> = <span class="keywordtype">double</span>[<a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a>][<a class="code" href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">mat_dim</a>];</div><div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;</div><div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;std::string <a class="code" href="namespaceade.html#adf0ae4c17a6835d771a3e8e1502f9ad6">to_string</a> (<span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; mat);</div><div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;</div><div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="keywordtype">double</span> <a class="code" href="namespaceade.html#aecb7b9f5d18655665d51992ee73d3e43">determinant</a> (<span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; mat);</div><div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;</div><div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="keywordtype">void</span> <a class="code" href="namespaceade.html#ad9cbea696e35b2eca835de3a246409d0">inverse</a> (<a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a> out, <span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; in);</div><div class="line"><a name="l00037"></a><span class="lineno">   37</span>&#160;</div><div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="keywordtype">void</span> <a class="code" href="namespaceade.html#ab6daf41b04bccd42950ae92db8a0439a">matmul</a> (<a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a> out, <span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; lhs, <span class="keyword">const</span> <a class="code" href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">MatrixT</a>&amp; rhs);</div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;</div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;}</div><div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;</div><div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">#endif </span></div><div class="ttc" id="namespaceade_html_abe7612b911dddb042aa394cc0125ea69"><div class="ttname"><a href="namespaceade.html#abe7612b911dddb042aa394cc0125ea69">ade::rank_cap</a></div><div class="ttdeci">const uint8_t rank_cap</div><div class="ttdoc">Number of dimsensions in a shape/coordinate. </div><div class="ttdef"><b>Definition:</b> shape.hpp:34</div></div>
 <div class="ttc" id="namespaceade_html_a5d20bdd43f50367b1d8780c145cfe0f3"><div class="ttname"><a href="namespaceade.html#a5d20bdd43f50367b1d8780c145cfe0f3">ade::mat_dim</a></div><div class="ttdeci">const uint8_t mat_dim</div><div class="ttdoc">Number of rows and columns for the homogeneous matrix. </div><div class="ttdef"><b>Definition:</b> matops.hpp:22</div></div>
 <div class="ttc" id="namespaceade_html_ab6daf41b04bccd42950ae92db8a0439a"><div class="ttname"><a href="namespaceade.html#ab6daf41b04bccd42950ae92db8a0439a">ade::matmul</a></div><div class="ttdeci">void matmul(MatrixT out, const MatrixT &amp;lhs, const MatrixT &amp;rhs)</div><div class="ttdoc">Apply matrix multiplication for lhs and rhs to out matrix. </div></div>
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 <div class="ttc" id="namespaceade_html_ae0f6687dd704fcf5c00f841da0509246"><div class="ttname"><a href="namespaceade.html#ae0f6687dd704fcf5c00f841da0509246">ade::MatrixT</a></div><div class="ttdeci">double[mat_dim][mat_dim] MatrixT</div><div class="ttdoc">Coordinate transformation matrix (using homogeneous) </div><div class="ttdef"><b>Definition:</b> matops.hpp:28</div></div>
 <div class="ttc" id="shape_8hpp_html"><div class="ttname"><a href="shape_8hpp.html">shape.hpp</a></div></div>
 <div class="ttc" id="namespaceade_html"><div class="ttname"><a href="namespaceade.html">ade</a></div><div class="ttdef"><b>Definition:</b> ade.hpp:13</div></div>
+<div class="ttc" id="namespaceade_html_aecb7b9f5d18655665d51992ee73d3e43"><div class="ttname"><a href="namespaceade.html#aecb7b9f5d18655665d51992ee73d3e43">ade::determinant</a></div><div class="ttdeci">double determinant(const MatrixT &amp;mat)</div></div>
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 </div><!-- fragment --></div><!-- contents -->

docs/menudata.js

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