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             .d888  .d888 .d8888b.   .d888                  888             
            d88P"  d88P" d88P  Y88b d88P"                   888             
            888    888          888 888                     888             
    .d88b.  888888 888888     .d88P 888888 8888b.  .d8888b  888888  8888b.  
   d88P"88b 888    888    .od888P"  888       "88b 88K      888        "88b 
   888  888 888    888   d88P"      888   .d888888 "Y8888b. 888    .d888888 
   Y88b 888 888    888   888"       888   888  888      X88 Y88b.  888  888 
    "Y88888 888    888   888888888  888   "Y888888  88888P'  "Y888 "Y888888 
        888                                                                 
   Y8b d88P                                                                 
    "Y88P"                                                                  

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             Convert a gff3 file into a set of fasta sequences

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A simple script. Can output protein or nucl sequences. Can also output all
"non-ORF" regions and contigs containing no ORFs too.

SEE: gff2fasta.pl -h for more info.

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Project home page

Information on the source tree, documentation, issues and how to contribute, see

http://github.com/minillinim/gff2fasta

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Cite

This software is currently unpublished.

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Copyright © 2012 Michael Imelfort. See LICENSE.txt for further details.

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