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Welcome to the IBS7048_Advanced_metagenomics wiki!

Metagenomics sequencing enabled acquiring large datasets in microbial changes. Due to recent developments, the size of the metagenomics sequencing data sets became larger and requires complex data processing pipelines. Consequently, their outcome also needs a large variety of exploratory analyses and multiple statistical tests.

This lecture will deal with the difference between 16S amplicon sequencing, long reads sequencing, shotgun metagenomics sequencing, and conventional pipelines corresponding to each sequencing result. At the end of this lecture, students will need to process example sequencing files to generate taxonomic annotation and run hypothesis tests on the sequencing results.

Furthermore, this source is open to anyone and can revisit anytime. Regarding copyright, please refer to the link to this repository in case of using any of the material listed here.