An inexpensive semi-automated sample processing pipeline for cell-free RNA

Overview:

Code associated with the above titled manuscript. Includes both code/primary data to generate figures and to run pipeline

See each folder for specific overview and readme.

Getting started

• Install miniconda if you do not have it already

• Git clone this repo

  git clone https://github.com/miramou/cfRNA_pipeline_automation.git

• Change into this directory

• Navigate to "Opentrons/" to run semi-automated pipeline

• Navigate to "Manuscript_Figs/" to see code associated with figures