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Transformer in Chemical Language Model sometimes misunderstands chirality

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Difficulty in chirality recognition for Transformer architectures learning chemical structures from string representations

Investigation on procedure of Transformer learning chemical structure.

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Yoshikai Y, Mizuno T, Nemoto S, Kusuhara H. Difficulty in chirality recognition for Transformer architectures learning chemical structures from string representations. Nat Commun. 2024 Feb 16;15(1):1197. doi: 10.1038/s41467-024-45102-8. PMID: 38365821; PMCID: PMC10873378.

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For how to build an environment and use our codes, see usage.md

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If you have any questions or comments, please feel free to create an issue on github here, or email us:

  • yyoshikai12[at]gmail.com
  • tadahaya[at]gmail.com
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Transformer in Chemical Language Model sometimes misunderstands chirality

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