Cortical Rodent Thickness Analysis

Find the tool on

NITRC : https://www.nitrc.org/projects/rodentthickness/
Github: https://github.com/mjacquem/RodentThickness 

Contact : mjacquem@unc.edu

tool to measure cortical thickness of rodent brain

These softwares need to be installed before executing the tool :

ImageMath
measureThicknessFilter
GenParaMeshCLP
ParaToSPHARMMeshCLP
ShapeWorksRun
ShapeWorksGroom
SegPostProcess
BinaryToDistanceMap
MeshPointsIntensitysampling

The programs use:

Python2.6 or Python 2.7 with vtk installed
Rscript