Fast parameter inference for discrete state space continuous time (DSSCT) models in Julia
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The Discuit.jl package contains tools for parameter inference and simulation of discrete state space continuous time (DSSCT) models in Julia. See Discuit in R for the corresponding R package.
- Customisable finite adaptive MCMC algorithm for fast parameter inference.
- Pooley model based proposal (MBP) method for improved mixing.
- Simulation via the Gillespie direct method.
- Automated tools for convergence diagnosis and analysis.
The package is not registered and must be added via the package manager Pkg.
From the REPL type ] to enter the Pkg mode and run:
pkg> add https://github.com/mjb3/Discuit.jl
See the package documentation for further information and examples.