This repo contains source code and data to produce Supplementary Material.
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supplementary.Rmd: R Markdown file to compile the PDF
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supplementary.pdf: Supplemental Material, the PDF
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header.tex: LaTeX packages that used to compile the PDF
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7MWE_A.csv: the amino acid hydrophobicity or hydrophilicity scales output of human E3 ubiquitin-protein ligase HUWE1 Chain A(NCBI_id:7MWE_A) using Expasy-Protscale with default parameters.
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gp200.nwk: newick text of gp200 tree was published on https://europepmc.org/article/MED/21113103.
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GCST90007012_buildGRCh37.tsv : SNP data was collected from GWAS Catalog and published on https://www.nature.com/articles/s42003-020-01416-z.
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data1.txt: microbe relative abundance data was published on https://www.sciencedirect.com/science/article/abs/pii/S0048969719352659.
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sigdata.rda: significant levels of microbe relative abundance data was published on https://www.sciencedirect.com/science/article/abs/pii/S0048969719352659.
To compile the supplemental_file.pdf, please run the following command in R:
rmarkdown::render('supplementary.Rmd')
Here is the output of devtools::session_info() on the system on which the document was compiled:
# - Session info ----------------------------------------
# setting value
# version R version 4.1.1 (2021-08-10)
# os Windows 10 x64
# system x86_64, mingw32
# ui RStudio
# language (EN)
# collate Chinese (Simplified)_China.936
# ctype Chinese (Simplified)_China.936
# tz Asia/Taipei
# date 2021-09-07
#
# - Packages ----------------------------------------------------------------------------------------------------
# package * version date lib source
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