run all three data

mjirik · Jun 15, 2019 · 715f724 · 715f724
1 parent 7211fc8
commit 715f724
Showing 1 changed file with 24 additions and 24 deletions.
diff --git a/experiments/lobulus_precision.py b/experiments/lobulus_precision.py
@@ -63,27 +63,27 @@
 mainapp.set_parameter("Processing;Lobulus Segmentation;Central Vein Segmentation;Threshold", 0.20)
 mainapp.run_lobuluses(None)
 
-# #############
-#
-# mainapp.set_output_dir(experiment_dir/"PIG-003")
-# fn = io3d.datasets.join_path(
-#     "medical/orig/Scaffan-analysis/PIG-003_J-18-0165_HE.ndpi", get_root=True
-# )
-# logger.debug(f"fn exists {Path(fn).exists()}, fn: {fn}")
-# mainapp.set_input_file(fn)
-# mainapp.set_annotation_color_selection("#0000FF") # Blue is used for unlabeled
-# mainapp.set_annotation_color_selection("#00FF00")
-# mainapp.run_lobuluses(None)
-#
-# #############
-#
-#
-#
-# mainapp.set_output_dir(experiment_dir/"PIG-004")
-# fn = io3d.datasets.join_path(
-#     "medical/orig/Scaffan-analysis/PIG-004_BBJ-004-4_HE_parenchyme.ndpi", get_root=True
-# )
-# logger.debug(f"fn exists {Path(fn).exists()}, fn: {fn}")
-# mainapp.set_input_file(fn)
-# mainapp.set_annotation_color_selection("#00FF00")
-# mainapp.run_lobuluses(None)
+#############
+
+mainapp.set_output_dir(experiment_dir/"PIG-003")
+fn = io3d.datasets.join_path(
+    "medical/orig/Scaffan-analysis/PIG-003_J-18-0165_HE.ndpi", get_root=True
+)
+logger.debug(f"fn exists {Path(fn).exists()}, fn: {fn}")
+mainapp.set_input_file(fn)
+mainapp.set_annotation_color_selection("#0000FF") # Blue is used for unlabeled
+mainapp.set_annotation_color_selection("#00FF00")
+mainapp.run_lobuluses(None)
+
+#############
+
+
+
+mainapp.set_output_dir(experiment_dir/"PIG-004")
+fn = io3d.datasets.join_path(
+    "medical/orig/Scaffan-analysis/PIG-004_BBJ-004-4_HE_parenchyme.ndpi", get_root=True
+)
+logger.debug(f"fn exists {Path(fn).exists()}, fn: {fn}")
+mainapp.set_input_file(fn)
+mainapp.set_annotation_color_selection("#00FF00")
+mainapp.run_lobuluses(None)