fix gm

mjoppich · Jul 13, 2019 · 3735644 · 3735644
1 parent 226926e
commit 3735644
Showing 1 changed file with 6 additions and 7 deletions.
diff --git a/install_templates/install_graphmap.igui b/install_templates/install_graphmap.igui
@@ -191,27 +191,27 @@ $NCCMD <<EOF
     <relocate id="graphmap_align_gtf_rel" from="\${graphmap_align_gtf}" wsl="\${WSLsel}"/>
     <relocate id="graphmap_align_output_rel" from="\${graphmap_align_output}" wsl="\${WSLsel}"/>
 
-    <add id="args">
+    <add id="args" sep=" ">
         <value from="\${graphmap_mode}"/>
-        <if comp="IS_SET" value1="\${graphmap_align_reference_rel}">
+        <if comp="IS_SET" value1="\${graphmap_align_reference_rel}"  sep=" ">
             <const>-r</const>
             <value from="\${graphmap_align_reference_rel}"/>
         </if>
 
-        <if comp="IS_SET" value1="\${graphmap_align_gtf}">
+        <if comp="IS_SET" value1="\${graphmap_align_gtf}" sep=" ">
             <const>--gtf</const>
             <value from="\${graphmap_align_gtf_rel}"/>
         </if>
 
-        <if comp="IS_SET" value1="\${graphmap_align_reads_rel}">
+        <if comp="IS_SET" value1="\${graphmap_align_reads_rel}" sep=" ">
             <const>-d</const>
             <value from="\${graphmap_align_reads_rel}"/>
         </if>        
 
 
         <value from="\${graphmap_options}"/>
 
-        <if comp="IS_SET" value1="\${graphmap_align_output_rel}">
+        <if comp="IS_SET" value1="\${graphmap_align_output_rel}" sep=" ">
             <const>-o</const>
             <value from="\${graphmap_align_output_rel}"/>
         </if>         
@@ -228,7 +228,6 @@ $NCCMD <<EOF
 </execution>
 </template>
 
-
 EOF
 
-fi
+fi