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misc check fixes

misc check fixes #879

Workflow file for this run

on:
push:
branches:
- '*'
pull_request:
branches:
- master
- dev
name: R-CMD-check
jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) ${{ matrix.config.suffix }}
strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: 'release', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: macOS-latest, r: 'release', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: ubuntu-latest, r: 'devel', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: ubuntu-latest, r: 'release', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: ubuntu-latest, r: 'oldrel', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: ubuntu-latest, r: '4.1', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: ubuntu-latest, r: '4.0', suffix: '', not_cran: 'true', vignettes: 'NULL'}
- {os: ubuntu-latest, r: '3.6', suffix: '', not_cran: 'true', vignettes: 'NULL'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- uses: actions/checkout@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
use-public-rspm: true
- uses: r-lib/actions/setup-pandoc@v2
- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}
- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-1-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-1-
- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install pngquant
if: runner.os == 'Linux'
run: |
sudo apt-get install -y pngquant
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}
- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
_R_CHECK_FORCE_SUGGESTS_: false
NOT_CRAN: ${{ matrix.config.not_cran }}
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran", ${{ matrix.config.vignettes }}), error_on = "warning", check_dir = "check")
shell: Rscript {0}
- name: Upload check results
if: failure()
uses: actions/upload-artifact@v3
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
- name: Test coverage
if: matrix.config.r == 'release' && runner.os == 'Linux'
run: covr::codecov()
shell: Rscript {0}