test some other ontologies

README.rdoc

@@ -8,6 +8,8 @@ A simple Ruby gem for parsing OBO 1.2 formatted ontology files.  Useful for repo
 
 == Use
 
+=== General 
+
     require 'rubygems'
     require 'obo_parser'
     foo = parse_obo_file(File.read('my_ontology.obo'))  # => An OboParser instance  
@@ -36,6 +38,11 @@ A simple Ruby gem for parsing OBO 1.2 formatted ontology files.  Useful for repo
 
     foo.terms.first.relationships                       # => [['relation_ship', 'FOO:123'], ['other_relationship', 'FOO:456'] ...] An array of [relation, related term id], includes 'is_a', 'disjoint_from' and Typedefs
 
+=== Convenience methods  
+
+    foo.term_hash                                       # => { term (String) => id (String), ... for each [Term] in the file. } !! Assumes names terms are unique, they might not be, in which case you get key collisions. 
+    foo.id_hash                                         # => { id (String) => term (String), ... for each [Term] in the file. } 
+
 See also /test/test_obo_parser.rb
 
 == Utilties

lib/utilities.rb

@@ -10,7 +10,7 @@ module OboParser::Utilities
 	#	of3 = File.read('hao3.obo')	
 	#	of4 = File.read('hao4.obo')	
   #
-  #  OboParser::Utilities::dump_comparison_by_id([of1, of2, of3, of4])
+  # OboParser::Utilities::dump_comparison_by_id([of1, of2, of3, of4])
   def self.dump_comparison_by_id(files = []) # :yields: String
     of = [] 
     files.each_with_index do |f, i|