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  1. RNA-FM RNA-FM Public

    RNA foundation model

    Jupyter Notebook 179 15

  2. e2efold e2efold Public

    pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

    Python 107 17

  3. CLEAR CLEAR Public

    CLEAR: Self-supervised contrastive learning for integrative single-cell RNA-seq data analysis

    Python 30 8

  4. RhoFold RhoFold Public

    RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach

    Python 23 5

  5. USPNet USPNet Public

    Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model

    Python 22 2

  6. RiboDiffusion RiboDiffusion Public

    ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

    Python 22 3

Repositories

Showing 10 of 11 repositories
  • CasAINet Public

    CasAINet: accurate and fast detection of Cas proteins via robust large language models and deep attentive neural networks

    ml4bio/CasAINet’s past year of commit activity
    0 0 0 0 Updated Jul 29, 2024
  • ifDEEPre Public

    large protein language-based deep learning enables interpretable and fast predictions of enzyme commission numbers

    ml4bio/ifDEEPre’s past year of commit activity
    Python 2 MIT 1 0 1 Updated Jul 24, 2024
  • Dense-Homolog-Retrieval Public

    Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

    ml4bio/Dense-Homolog-Retrieval’s past year of commit activity
    Python 0 0 0 0 Updated Jul 8, 2024
  • RhoDesign Public

    RhoDesign is a structure-to-sequence model for RNA design.

    ml4bio/RhoDesign’s past year of commit activity
    Jupyter Notebook 8 MIT 0 0 0 Updated May 25, 2024
  • RiboDiffusion Public

    ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

    ml4bio/RiboDiffusion’s past year of commit activity
    Python 22 MIT 3 0 0 Updated Apr 23, 2024
  • USPNet Public

    Nature Computational Science: Unbiased organism-agnostic and highly sensitive signal peptide predictor with deep protein language model

    ml4bio/USPNet’s past year of commit activity
    Python 22 MIT 2 1 0 Updated Apr 15, 2024
  • e2efold Public

    pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"

    ml4bio/e2efold’s past year of commit activity
    Python 107 MIT 17 8 0 Updated Apr 7, 2024
  • RNA-FM Public

    RNA foundation model

    ml4bio/RNA-FM’s past year of commit activity
    Jupyter Notebook 179 MIT 15 9 0 Updated Apr 1, 2024
  • RhoFold Public

    RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach

    ml4bio/RhoFold’s past year of commit activity
    Python 23 Apache-2.0 5 2 0 Updated Jan 29, 2024
  • E2Efold-3D Public

    End-to-End Deep Learning Method for accurate de novo RNA 3D Structure Prediction

    ml4bio/E2Efold-3D’s past year of commit activity
    3 0 1 0 Updated Jan 4, 2024

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