ampliconDIVider version 1.2.0

• Added support for hard clipping and padding in alignment files

ampliconDIVider version 1.1.1

• Adjusted a file path to allow the -r option to work correctly.

ampliconDIVider version 1.1.0

• Added the ranges (-r) option. This allows users to specify a range of interest for each target (for example, the area immediately around a predicted mutation site). The program will use this information to identify the variants produced in the range, and will produce a corresponding summary file indicating which samples contained which variants.
• The FASTA reference input now uses -f instead of -r.
• Added the "ranges" files for Varshney et al. sets 1-3. The set1_ranges file can be used with example.bam to test the script.
• Added the version (-v) option, which prints the version number and quits.
• The most frequent DIV for a given target/barcode combination now requires a full word match, rather than just matching as a subset of a longer string. For example, "ACTG" will match "ACTG", but not "TACTGA".

ampliconDIVider version 1.0.0

Initial release. This is the version used for the analysis in Varshney et al.