- microbiome_helper 22 An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
- MicrobeDB 14 Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
- biotorrents 11 A BitTorrent tracker for legal open sharing of scientific data
- get_mgrast_data 2 Scripts that allow easy retrieval of information from the MG-RAST API
- gengis-rca-plugin 1 A reference condition analysis plugin for GenGIS
Repositories contributed to
- picrust/picrust 27 Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests
- edamontology/edamontology 28 EDAM is an ontology of bioinformatics types of data including identifiers, data formats, operations and topics.
- CGEB-IMR/CGEB-IMR.github.io 0 CGEB Integrated Microbiome Resource
- DalMUG/dalmug.github.io 0 Repository for the DalMUG organization web pages
- dparks1134/STAMP 13 Statistical Analysis of Metagenomic Profiles