- microbiome_helper 28 An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.
- MicrobeDB 14 Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
- biotorrents 11 A BitTorrent tracker for legal open sharing of scientific data
- get_mgrast_data 2 Scripts that allow easy retrieval of information from the MG-RAST API
- gengis-rca-plugin 1 A reference condition analysis plugin for GenGIS