Can I do denovo chimeric detection with MBH

[caijian89]

Hello！
I am a fresh man with the bioinformatic analysis of microbial community. You MBH is really awesome and helpful.
I have a question with the chimer filter process as following: Can I do a denovo chimeric detection with your pipeline, and how to do it within your Vitural system.

[gavinmdouglas]

Hey there, We don’t have a script to run de novo chimera checking, but I’ve added some example commands to our wiki site: https://github.com/mlangill/microbiome_helper/wiki/Remove-chimeric-reads#de-novo-chimera-checking <https://github.com/mlangill/microbiome_helper/wiki/Remove-chimeric-reads#de-novo-chimera-checking> Let me know if you have any questions. Cheers, Gavin

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On Jun 21, 2017, at 11:41 AM, caijian89 ***@***.***> wrote: Hello！ I am a fresh man with the bioinformatic analysis of microbial community. You MBH is really awesome and helpful. I have a question with the chimer filter process as following: Can I do a denovo chimeric detection with your pipeline, and how to do it within your Vitural system. — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#8>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AL6T0ygiUwtvLR6LJlkcP2vLSEjf4IROks5sGSuugaJpZM4OBEHR>.

[caijian89]

Hi Gavin！
Great thanks for your helpful reply.
^_^

Jian