Merge branch 'new-apis_v0.1.0-dev' into new-apis_v0.1.0-dev_more-debu…

…g-info

.github/CODEOWNERS

@@ -0,0 +1,3 @@
+# These owners will be the default owners for everything in the repo.
+# Unless a later match takes precedence,they will be requested for review when someone opens a pull request.
+* @mlcommons/gandlf-write

.github/workflows/black.yml

@@ -15,7 +15,8 @@ jobs:
         run: |
           echo "BLACK_VERSION=$(python -c 'from setup import black_version; print(black_version)')" >> $GITHUB_ENV
 
-      - uses: psf/black@stable
+      # ensure conformity with https://github.com/mlcommons/GaNDLF/blob/master/setup.py#L77
+      - uses: psf/black@23.11.0
         with:
           version: ${{ env.BLACK_VERSION }}
 

GANDLF/data/__init__.py

@@ -24,7 +24,7 @@ def get_train_loader(params):
             loader_type="train",
         ),
         batch_size=params["batch_size"],
-        shuffle=True,
+        shuffle=False,
         pin_memory=False,  # params["pin_memory_dataloader"], # this is going OOM if True - needs investigation
     )
 

GANDLF/models/Readme.md

@@ -23,4 +23,5 @@
 - All parameters should be taken as input, with special parameters (for e.g., `residualConnections` for `unet`) should not be exposed to the parameters dict, and should be handled separately via another class.
     - For example, `GANDLF.models.unet.unet` has a `residualConnections` parameter, which is not exposed to the parameters dict, and a separate class `GANDLF.models.unet.resunet` is defined which enables this flag.
 - Add the model's identifier to `GANDLF.models.__init__.global_model_dict` as appropriate.
-- Call the new mode from the config using the `model` key.
+- Call the new mode from the config using the `model` key.
+- To update the tests, append the new model key to either in `all_models_segmentation`, `all_models_segmentation` or `all_models_classification` in [test_full.py](https://github.com/mlcommons/GaNDLF/blob/master/testing/test_full.py)

setup.py

@@ -102,6 +102,8 @@ def run(self):
     "torchinfo==1.7.0",
     "segmentation-models-pytorch==0.3.3",
     "ACSConv==0.1.1",
+    # https://github.com/docker/docker-py/issues/3256
+    "requests<2.32.0",  # 2.32.0 are not compatible with docker 7.0.0; to remove restriction once docker is fixed
     "docker",
     "dicom-anonymizer==1.0.12",
     "twine",