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use R 3.4
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mlux86 committed Feb 12, 2018
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2 changes: 1 addition & 1 deletion DESCRIPTION
Expand Up @@ -6,7 +6,7 @@ Description: flowLearn is an R package for predicting flow cytometry gating
thresholds based on only density information and (very) few manual expert gates
provided.
Depends:
R (>= 3.5)
R (>= 3.4)
License: file LICENSE
Encoding: UTF-8
LazyData: true
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8 changes: 2 additions & 6 deletions README.md
Expand Up @@ -24,10 +24,6 @@ iteratively improve the initial training.

## Using this software

- **IMPORTANT: To meet the requirements of Bioconductor, the minimum `R` version has been changed to
3.5.** There, it is currently under review. However, flowLearn still works with the latest stable
version of `R` (3.4). You may change that in the `DESCRIPTION` file.

- FlowLearn is very well documented and provides a quick start vignette with some example data.

- Clone the repository and build the `R` package using `devtools::install(build_vignettes = T)`
Expand All @@ -37,9 +33,9 @@ iteratively improve the initial training.
## Files in the repository

- `extra/eval.R` and `extra/eval.sh`: Scripts used for evaluating flowLearn on different data sets
- `extra/prepare_*` scripts: Converting raw FCS files into flowLearn's custom `DensityData` format
- `extra/prepare_*` scripts: Converting raw FCS files into flowLearn's custom `DensityData` format
- `extra/comparisons/` Scripts for running and evaluating flowSOM and DeepCyTOF on the mice data set.

## Licensing

It is permitted to use flowLearn for non-commercial, i.e. academic or other scholarly research use. Please have a look at the LICENSE file for details.
It is permitted to use flowLearn for non-commercial, i.e. academic or other scholarly research use. Please have a look at the LICENSE file for details.

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