Skip to content

Commit

Permalink
DOC: Fix bibtex citation in plot_dipole_orientations.py #8944. (#9144)
Browse files Browse the repository at this point in the history
  • Loading branch information
anaradanovic committed Mar 18, 2021
1 parent 0ddde8c commit 4ca89e6
Showing 1 changed file with 10 additions and 16 deletions.
26 changes: 10 additions & 16 deletions tutorials/source-modeling/plot_dipole_orientations.py
Expand Up @@ -82,9 +82,9 @@
# While the source space defines the position of the dipoles, the inverse
# operator defines the possible orientations of them. One of the options is to
# assign a fixed orientation. Since the neural currents from which MEG and EEG
# signals originate flows mostly perpendicular to the cortex [1]_, restricting
# the orientation of the dipoles accordingly places a useful restriction on the
# source estimate.
# signals originate flows mostly perpendicular to the cortex
# :footcite:`HamalainenEtAl1993`, restricting the orientation of the dipoles
# accordingly places a useful restriction on the source estimate.
#
# By specifying ``fixed=True`` when calling
# :func:`mne.minimum_norm.make_inverse_operator`, the dipole orientations are
Expand Down Expand Up @@ -136,11 +136,12 @@
# source estimate sensitive to the spacing of the dipoles along the cortex,
# since the curvature of the cortex changes within each ~10 square mm patch.
# Furthermore, misalignment of the MEG/EEG and MRI coordinate frames is more
# critical when the source dipole orientations are strictly constrained [2]_.
# To lift the restriction on the orientation of the dipoles, the inverse
# operator has the ability to place not one, but three dipoles at each
# location defined by the source space. These three dipoles are placed
# orthogonally to form a Cartesian coordinate system. Let's visualize this:
# critical when the source dipole orientations are strictly constrained
# :footcite:`LinEtAl2006`. To lift the restriction on the orientation of the
# dipoles, the inverse operator has the ability to place not one, but three
# dipoles at each location defined by the source space. These three dipoles are
# placed orthogonally to form a Cartesian coordinate system. Let's visualize
# this:
fig = mne.viz.create_3d_figure(size=(600, 400))

# Plot the cortex
Expand Down Expand Up @@ -218,11 +219,4 @@
###############################################################################
# References
# ----------
# .. [1] Hämäläinen, M. S., Hari, R., Ilmoniemi, R. J., Knuutila, J., &
# Lounasmaa, O. V. "Magnetoencephalography - theory, instrumentation, and
# applications to noninvasive studies of the working human brain", Reviews
# of Modern Physics, 1993. https://doi.org/10.1103/RevModPhys.65.413
#
# .. [2] Lin, F. H., Belliveau, J. W., Dale, A. M., & Hämäläinen, M. S. (2006).
# Distributed current estimates using cortical orientation constraints.
# Human Brain Mapping, 27(1), 1–13. http://doi.org/10.1002/hbm.20155
# .. footbibliography::

0 comments on commit 4ca89e6

Please sign in to comment.