Add MNE subpackages to sys_info()

[rob-luke]

Reference issue

This is an issue as PR.

What does this implement/fix?

My immediate go-to when I have issues or help someone else is mne.sys_info(). Often in my case however, issues are caused by incompatibilities between various MNE sub packages (which I define as python packages hosted within the mne-tools organisation that aren't MNE-Python). I see that the sub package mne_qt_browser has been added to sys_info (but I guess this is because there are plans to merge it to MNE-Python in the future). And mne_bids was already included.

Can we add the other sub packages to the sys info output? E.g. NIRS, Connectivity, Features

Additional information

I also moved mne_bids from developer to user dependencies, as I think its commonly used by non developers too.

I wasn't sure if mne-bids-pipeline fitted in to this scope and should be added too? Or if its more a tool in itself.

[larsoner]

I think no to MNE-BIDS-Pipeline because it's not a proper package (?) but let's see what @hoechenberger and @agramfort say. +1 for merge from my end

[agramfort]

yes mne-bids-pipeline is not a package (maybe at this point)

[hoechenberger]

The BIDS Pipeline so far isn't a proper package and hence shouldn't be listed here
(but see my idea for a pipeline runner package)

[larsoner]

Okay I merged as-is even though it was draft since it seemed complete enough to me, but feel free to open a PR for any follow-up changes if you had some in mind @rob-luke

[rob-luke]

Thanks

[sappelhoff]

We get the following error on mne-bids main CI when testing with MNE-Python main, I suspect this PR had something to do with it: https://github.com/mne-tools/mne-bids/runs/4997582345?check_suite_focus=true

Traceback (most recent call last):
  File "/opt/hostedtoolcache/Python/3.10.2/x64/bin/mne", line 33, in <module>
    sys.exit(load_entry_point('mne', 'console_scripts', 'mne')())
  File "/opt/hostedtoolcache/Python/3.10.2/x64/bin/mne", line 25, in importlib_load_entry_point
    return next(matches).load()
  File "/opt/hostedtoolcache/Python/3.10.2/x64/lib/python3.10/importlib/metadata/__init__.py", line 162, in load
    module = import_module(match.group('module'))
  File "/opt/hostedtoolcache/Python/3.10.2/x64/lib/python3.10/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
  File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
  File "<frozen importlib._bootstrap>", line 992, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "<frozen importlib._bootstrap>", line 1050, in _gcd_import
  File "<frozen importlib._bootstrap>", line 1027, in _find_and_load
  File "<frozen importlib._bootstrap>", line 1006, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 688, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 883, in exec_module
  File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
  File "/home/runner/work/mne-bids/mne-bids/mne-python/mne/__init__.py", line 22, in <module>
    from .utils import (set_log_level, set_log_file, verbose, set_config,
  File "/home/runner/work/mne-bids/mne-bids/mne-python/mne/utils/__init__.py", line 9, in <module>
    from .check import (check_fname, check_version, check_random_state,
  File "/home/runner/work/mne-bids/mne-bids/mne-python/mne/utils/check.py", line 21, in <module>
    from ._logging import warn, logger, verbose
  File "/home/runner/work/mne-bids/mne-bids/mne-python/mne/utils/_logging.py", line 8, in <module>
    from decorator import FunctionMaker
ModuleNotFoundError: No module named 'decorator'

[agramfort]

can it be caching pb? decorator package should be installed with base install https://github.com/mne-tools/mne-python/blob/main/requirements_base.txt

…

Message ID: ***@***.***>

[sappelhoff]

Just tried, it's not the caching.

[agramfort]

pip install mne from main does not install decorator?

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Message ID: ***@***.***>

[sappelhoff]

ah, wait --- I updated the circleci caches, ... need to do this for GH actions. Sorry for the noise.

[sappelhoff]

the issue is that we do

        git clone --depth 1 https://github.com/mne-tools/mne-python.git -b main
        pip install --no-deps -e ./mne-python