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API: Port ieeg gui over to mne-gui-addons and add tfr gui example #11616

Merged
merged 17 commits into from
Apr 13, 2023
Merged

API: Port ieeg gui over to mne-gui-addons and add tfr gui example #11616

merged 17 commits into from
Apr 13, 2023

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alexrockhill
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Deprecates mne.gui.locate_ieeg and moves it to mne_gui_addons

@larsoner
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larsoner commented Apr 3, 2023

For deprecation we shouldn't delete the code now. We now we should try/except an import and if it fails fall back to our code. Then once we release 1.4 and are in the 1.5.dev0 we can delete the old code

@alexrockhill
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Sounds good

@alexrockhill
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This should fail CIs until mne-gui-addons is added to conda-forge in a couple days, then I will try and rerun.

larsoner
larsoner reviewed Apr 4, 2023
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examples/inverse/evoked_ers_source_power.py Show resolved Hide resolved
tutorials/clinical/10_ieeg_localize.py Show resolved Hide resolved
mne/gui/__init__.py Outdated Show resolved Hide resolved
@alexrockhill @larsoner
Update mne/gui/__init__.py
047d270 
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>
larsoner
larsoner reviewed Apr 12, 2023
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@larsoner larsoner changed the title [MAINT, WIP] Port ieeg gui over to mne-gui-addons and add tfr gui example API: Port ieeg gui over to mne-gui-addons and add tfr gui example Apr 12, 2023
@larsoner
WIP: Link
ae56546
@larsoner
Merge remote-tracking branch 'upstream/main' into gui
b9657d8 
* upstream/main:
  MAINT: Add token [ci skip] (mne-tools#11622)
  API: One cycle of backward compat (mne-tools#11621)
  MAINT: Use git rather than zipball (mne-tools#11620)
  ENH: Speed up code a bit (mne-tools#11614)
@larsoner
FIX: Link
d040f18
@larsoner
FIX: Restore
cffa99e
@larsoner
FIX: Add
404a145
@larsoner larsoner mentioned this pull request Apr 12, 2023
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8 tasks
@larsoner larsoner enabled auto-merge (squash) April 12, 2023 18:29
@larsoner larsoner mentioned this pull request Apr 13, 2023
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@larsoner larsoner merged commit d0cf4db into mne-tools:main Apr 13, 2023
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@alexrockhill
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Thanks for finishing the PR @larsoner

@alexrockhill alexrockhill deleted the gui branch April 13, 2023 14:29
@drammock drammock mentioned this pull request Apr 13, 2023
Merged
larsoner added a commit to cbrnr/mne-python that referenced this pull request Apr 21, 2023
@larsoner
Merge remote-tracking branch 'upstream/main' into precommit
1770b7b 
* upstream/main: (50 commits)
  BUG: Fix bug with paths (mne-tools#11639)
  MAINT: Report download time and size (mne-tools#11635)
  MRG: Allow retrieval of channel names via make_1020_channel_selections() (mne-tools#11632)
  Fix index name in to_data_frame()'s docstring (mne-tools#11457)
  MAINT: Use VTK prerelease wheels in pre jobs (mne-tools#11629)
  ENH: Allow gradient compensated data in maxwell_filter (mne-tools#10554)
  make test compatible with future pandas (mne-tools#11625)
  Display SVG figures correctly in Report (mne-tools#11623)
  API: Port ieeg gui over to mne-gui-addons and add tfr gui example (mne-tools#11616)
  MAINT: Add token [ci skip] (mne-tools#11622)
  API: One cycle of backward compat (mne-tools#11621)
  MAINT: Use git rather than zipball (mne-tools#11620)
  ENH: Speed up code a bit (mne-tools#11614)
  [BUG, MRG] Don't modify info in place for transform points (mne-tools#11612)
  [BUG, MRG] Fix topomap extra plot generated, add util to check a range (mne-tools#11607)
  ENH: Add mne-bids-pipeline to mne sys_info (mne-tools#11606)
  MAINT: `coding: utf-8` is implicit in Python 3 (mne-tools#11599)
  ENH: Read eyetracking data (Eyelink) (Fork of mne-tools#10855 ) (mne-tools#11152)
  MAINT: In Python 3, do not prefix literals with `u` (mne-tools#11604)
  MAINT: object is an implicit base for all classes (mne-tools#11601)
  ...
larsoner added a commit to larsoner/mne-python that referenced this pull request Apr 25, 2023
@larsoner
Merge remote-tracking branch 'upstream/main' into cola5
7c44d72 
* upstream/main: (152 commits)
  FIX: missing channels/fiducials can be np.nan (mne-tools#11634)
  use py3.10 in precommit config (mne-tools#11648)
  MAINT: Unify GH Actions pytest (mne-tools#11644)
  MRG: Rename "Discourse" link in top navigation to "Forum" [ci skip] (mne-tools#11649)
  ENH: Add support for Harmonic Field correction (mne-tools#11536)
  Add pre-commit (mne-tools#11541)
  BUG: Fix bug with paths (mne-tools#11639)
  MAINT: Report download time and size (mne-tools#11635)
  MRG: Allow retrieval of channel names via make_1020_channel_selections() (mne-tools#11632)
  Fix index name in to_data_frame()'s docstring (mne-tools#11457)
  MAINT: Use VTK prerelease wheels in pre jobs (mne-tools#11629)
  ENH: Allow gradient compensated data in maxwell_filter (mne-tools#10554)
  make test compatible with future pandas (mne-tools#11625)
  Display SVG figures correctly in Report (mne-tools#11623)
  API: Port ieeg gui over to mne-gui-addons and add tfr gui example (mne-tools#11616)
  MAINT: Add token [ci skip] (mne-tools#11622)
  API: One cycle of backward compat (mne-tools#11621)
  MAINT: Use git rather than zipball (mne-tools#11620)
  ENH: Speed up code a bit (mne-tools#11614)
  [BUG, MRG] Don't modify info in place for transform points (mne-tools#11612)
  ...
larsoner added a commit to larsoner/mne-python that referenced this pull request Apr 25, 2023
@larsoner
Merge remote-tracking branch 'upstream/main' into kernel
bbc55af 
* upstream/main: (117 commits)
  FIX: missing channels/fiducials can be np.nan (mne-tools#11634)
  use py3.10 in precommit config (mne-tools#11648)
  MAINT: Unify GH Actions pytest (mne-tools#11644)
  MRG: Rename "Discourse" link in top navigation to "Forum" [ci skip] (mne-tools#11649)
  ENH: Add support for Harmonic Field correction (mne-tools#11536)
  Add pre-commit (mne-tools#11541)
  BUG: Fix bug with paths (mne-tools#11639)
  MAINT: Report download time and size (mne-tools#11635)
  MRG: Allow retrieval of channel names via make_1020_channel_selections() (mne-tools#11632)
  Fix index name in to_data_frame()'s docstring (mne-tools#11457)
  MAINT: Use VTK prerelease wheels in pre jobs (mne-tools#11629)
  ENH: Allow gradient compensated data in maxwell_filter (mne-tools#10554)
  make test compatible with future pandas (mne-tools#11625)
  Display SVG figures correctly in Report (mne-tools#11623)
  API: Port ieeg gui over to mne-gui-addons and add tfr gui example (mne-tools#11616)
  MAINT: Add token [ci skip] (mne-tools#11622)
  API: One cycle of backward compat (mne-tools#11621)
  MAINT: Use git rather than zipball (mne-tools#11620)
  ENH: Speed up code a bit (mne-tools#11614)
  [BUG, MRG] Don't modify info in place for transform points (mne-tools#11612)
  ...
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