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ENH: draft of mne report command #1261

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Closed

ENH: draft of mne report command #1261

wants to merge 61 commits into from

Commits on Jul 18, 2014

  1. ENH : draft of mne report command

    @agramfort @jasmainak
    agramfort authored and jasmainak committed Jul 18, 2014
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  2. ENH : start to use tempita

    @agramfort @jasmainak
    agramfort authored and jasmainak committed Jul 18, 2014
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  3. ENH: Added function to recursively search directory

    @jasmainak
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  4. FIX STY: Use read_evokeds() instead of read_evoked() + stylistic changes

    @jasmainak
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  5. ENH: Extended support for -cov.fif files by displaying covariance matrix

    @jasmainak
    jasmainak committed Jul 18, 2014
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  6. ENH: Extended support for -raw.fif files by printing the info repr

    @jasmainak
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  7. ENH STY: Add bootstrap buttons for toggling + cosmits

    @jasmainak
    jasmainak committed Jul 18, 2014
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  8. ENH: Added table of contents

    @jasmainak
    jasmainak committed Jul 18, 2014
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  9. ENH STY: Bad filenames in red + toggling for table lists + PEP8 fixes

    @jasmainak
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  10. ENH: Added navbar + footer + better button toggling 

    + open report in a browser when generated
+ removed deprecated functions
+ link to TOC
    @jasmainak
    jasmainak committed Jul 18, 2014
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  11. ENH: Move TOC to left

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    jasmainak committed Jul 18, 2014
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  12. ENH: Add plot_trans and optparser

    @jasmainak
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  13. ENH: Added plot_bem() and rebased mne.io.read_evokeds -> mne.read_evo… 

    …keds

abc
    @jasmainak
    jasmainak committed Jul 18, 2014
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  14. FIX: Embed js/css in html to work without internet

    @jasmainak
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  15. MISC FIXES: 

    1. Remove redundant function + include T1.mgz as accpetable filenames + show one view for BEM contours
2. Remove extraneous bullets in TOC and add scrollbar
3. finds T1.mgz only from the subjects directory
4. Remove build_tools + specify PIL in import
5. Sampling frequency read in from info file
6. Fix t1 global_id
    @jasmainak
    jasmainak committed Jul 18, 2014
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  16. ENH: Create a python interface for MNE Report

    @jasmainak
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  17. FIX: Add TOC to the html list in the end + robust checking for render… 

    …_trans
    @jasmainak
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  18. FIX: Nested imports + misc. API modifications

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  19. ENH: Add sliders to BEM contours

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  20. ENH: Print repr for forward files

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  21. ENH: Add plot_drop_log

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  22. ENH: Nicer TOC

    @jasmainak
    jasmainak committed Jul 18, 2014
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  23. Add tempita

    @jasmainak
    jasmainak committed Jul 18, 2014
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  24. FIX: Combine BEM and T1.mgz + show every two slices

    @jasmainak
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  25. FIX: top margin + initiate BEM in the center slice

    @jasmainak
    jasmainak committed Jul 18, 2014
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  26. ENH: Add interactivity to plot_events using mpld3

    @jasmainak
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  27. FIX: more memory efficient + private functions + verbose option

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  28. ENH: Add --no-browser option

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  29. FIX: Make mpld3 interactivity work without internet

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  30. FIX DOC: Update whats_new + StringIO -> BytesIO and other py3 compat … 

    …issues
    @jasmainak
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  31. ENH: Add --overwrite option

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  32. FIX: Tempita doctest errors on Travis + minify js/css

    @jasmainak
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  33. TESTS: Add tests for mne report

    @jasmainak
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  34. DOC: Update python_reference.rst and add mne.report to it

    @jasmainak
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  35. FIX: Address Alex's comments

    @jasmainak
    jasmainak committed Jul 18, 2014
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  36. FIX: add interactive param to add_section + allow more filetypes

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  37. FIX: Make Travis happy by updating setup.py

    @jasmainak
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  38. FIX: Don't hide caption when clicking TOC + make info_fname optional

    @jasmainak
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  39. ENH FIX: Render buttons for only sections rendered + allow adding to … 

    …existing section
    @jasmainak
    jasmainak committed Jul 18, 2014
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  40. Misc Fixes 

    - Use plot_cov to get covariance plots
- Fix tests
- Make _render_eve work without sfreq
    @jasmainak
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  41. FIX: remove redundant text parameter and use str.capitalize() instead

    @jasmainak
    jasmainak committed Jul 18, 2014
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  42. Make test pass without mpld3. Later use requires_mpld3

    @jasmainak
    jasmainak committed Jul 18, 2014
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  43. ENH: Order plots by sections (in order of appearance / not alphabetic)

    @jasmainak
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  44. FIX: Misc Fixes 

    FIX1: Use realpath instead of abspath
FIX2: Do not try to render -trans.fif if subjects_dir and subject not provided
FIX3: Pass full path for saving report. Default is self.data_path
    @jasmainak
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  45. ENH: Use tempita default parameters to set interactivity to False by … 

    …default
    @jasmainak
    jasmainak committed Jul 18, 2014
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  46. ENH: _render_trans reloaded

    @jasmainak
    jasmainak committed Jul 18, 2014
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  47. ENH: Add topomap for evoked object

    @jasmainak
    jasmainak committed Jul 18, 2014
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  48. FIX: Remove interactivity. yticklabels not rendered correctly

    @jasmainak
    jasmainak committed Jul 18, 2014
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  49. FIX: render figs in add_section as separate elements of the self.html… 

    … list
    @jasmainak
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  50. FIX: Allow multiple saves and give data_path warning only if fname is… 

    … None
    @jasmainak
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  51. TESTS: Improve coverage + timing of tests using _check_report_mode de… 

    …corator
    @jasmainak
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  52. FIX: Nasty hard-coded links when saving from Chrome bug

    @jasmainak
    jasmainak committed Jul 18, 2014
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  53. TEST: Fix tight_layout warnings

    @jasmainak
    jasmainak committed Jul 18, 2014
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  54. ENH : fix tempita for py3k

    @agramfort @jasmainak
    agramfort authored and jasmainak committed Jul 18, 2014
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  55. FIX : use input for py3k

    @agramfort @jasmainak
    agramfort authored and jasmainak committed Jul 18, 2014
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  56. fix base64

    @agramfort @jasmainak
    agramfort authored and jasmainak committed Jul 18, 2014
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  57. FIX : images on py3k

    @agramfort @jasmainak
    agramfort authored and jasmainak committed Jul 18, 2014
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  58. FIX: add tempita to setup

    @jasmainak
    jasmainak committed Jul 18, 2014
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  59. FIX tempita doctest errors

    @jasmainak
    jasmainak committed Jul 18, 2014
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  60. ENH: add support for inverse operator

    @jasmainak
    jasmainak committed Jul 18, 2014
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Commits on Jul 19, 2014

  1. CSS tweaks to make sure the TOC text is rendered correctly

    @jasmainak
    jasmainak committed Jul 19, 2014
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