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[MRG] Sleep tutorial #5718

Merged
merged 83 commits into from Jan 14, 2019
Merged

[MRG] Sleep tutorial #5718

merged 83 commits into from Jan 14, 2019
+1,102 −24

Commits on Jan 13, 2019

  1. init tutorial sleep

    @Slasnista @agramfort
    Slasnista authored and agramfort committed Jan 13, 2019
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  2. Add whats new

    @massich @agramfort
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  3. Add sleep tuto into the documentation index

    @massich @agramfort
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  4. Comment the entire tuto to check that it compiles

    @massich @agramfort
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  5. Add sleep-edf to datasets_index

    @massich @agramfort
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  6. proof of concept ok for sleep data

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  7. add fetch with test and update example

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  8. update doc

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  9. more

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  10. oups

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  11. preprocessing annotations

    @Slasnista @agramfort
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  12. update hypnogram figure

    @Slasnista @agramfort
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  13. simplifying stuff

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  14. Even simpler solution

    @massich @agramfort
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  15. typo

    @massich @agramfort
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  16. Use md5 as default 

    use better default
    @massich @agramfort
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  17. deprecate md5

    @massich @agramfort
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  18. skip docstring test

    @massich @agramfort
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  19. deprecate md5sum

    @massich @agramfort
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  20. feature extraction + model training

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  21. rebase What's new

    @massich @agramfort
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  22. training + prediction

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  23. more narrative version + shpinx things

    @massich @agramfort
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  24. wip (use FunctionTransformer)

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  25. simplify

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  26. don't forget to normalize psds

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  27. move bob below and add narrative

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  28. FIX: doc

    @massich @agramfort
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  29. ENH: fit directly epochs to sklearn.pipeline

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  30. fix travis [skip ci]

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  31. wip: doc iteration

    @massich @agramfort
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  32. simplify PSD plot

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  33. doc pass

    @massich @agramfort
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  34. add labels to the PSD

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  35. minor

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  36. wip

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  37. Fix: typo

    @massich @agramfort
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  38. WIP: update fetcher

    @massich @agramfort
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  39. physionet annotations have 8 different labels not 7

    @massich @agramfort
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  40. wip

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  41. ENH: Split physionet fetcher into .age .temazepam

    @massich @agramfort
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  42. FIX: use hash_type instead of hashtype

    @massich @agramfort
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  43. wip

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  44. wip

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  45. wip

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  46. wip

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  47. wip

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  48. cosmit

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  49. start with temazepam dataset

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  50. wip in temazepan

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  51. finish temazepam fetcher

    @massich @agramfort
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  52. doc physionet's age

    @massich @agramfort
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  53. Add temazepam records

    @massich @agramfort
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  54. Merge master's whats new

    @massich @agramfort
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  55. add sklearn's classificaiton report

    @massich @agramfort
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  56. refactor fetchers

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  57. refactor data_path

    @massich @agramfort
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  58. move records

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  59. ups missing file

    @massich @agramfort
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  60. clean up

    @massich @agramfort
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  61. nitpick

    @massich @agramfort
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  62. link sklearn

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  63. pep8

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  64. cosmit

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  65. iter of sleep fetchers

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  66. fix

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  67. doc fixes

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  68. fix CIs

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Commits on Jan 14, 2019

  1. Merge branch 'master' into sleep_tutorial

    @massich
    massich committed Jan 14, 2019
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  2. minor review

    @massich
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  3. use pytest tmpdirs

    @massich
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  4. mock _fetch_file to avoid downloading and speed up the testing

    @massich
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  5. wip

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  6. add mock packages to environment.yml

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  7. ENH: refactor mocked object call inspection

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  8. TST: no longer requries good network

    @massich
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  9. add mock dependencies in travis

    @massich
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  10. old stuff we forgot

    @massich
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  11. fix docstring

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  12. update requriements for 3.7 travis

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  13. just pytest-mock should be explicitely listed and don't list test lev… 

    …el deps in readme
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  14. missing

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  15. these tests are not slow. Just need good network

    @agramfort
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