Fix and Expand tests part II

[jbreue16]

This PR continues #155 in fixing and expand our tests.

To do - Fix tests

• Fix Test scripts that should definitely work
  • multiple particle type Jacobian AD tests dont work in debug mode (assertion error in ParticleHelper.cpp extendModelToManyParticleTypes function )
  • debug tolerance for LRM LWE numerical reference parameter sensitivity 000 (0.0 != - 0.0)
  • add numerical reference tests to CI, debug why they dont run on server
  • 1D models bwd flow tests (Fix and expand tests #155)
  • inlet DOF Jacobian (Fix and expand tests #155)
  • time derivative Jacobian FD (Fix and expand tests #155)
  • LRM + LRMP + GRM + GRM2D consistent init with SMA, should be fixed with Change consistent initialization from pure Newton to pseudo transient continuation approach #163
  • LRM + LRMP + GRM + GRM2D fwd vs bwd flow sensitivities
  • 2D GRM: 1) bwd == flow, 2) fwd/bwd Jacobian, 3) req. binding flux Jacobian vs FD, 4) fwd bwd flow sensitivity, 5) multiple particle types AD Jacobian
  • CSTR linear binding single particle matches particle distribution (CSTR-Simulation.cpp)
• Adjust tolerances
  • LRM + LRMP + GRM forward sensitivity tests FD
  • all other FD tests (Fix and expand tests #155)
• Actual errors: comment out and add new issue (if required)
  • colloidal Jacobian Add documentation for colloidal model #85

Fixes #70.

To do - Expand tests

• test radial flow (Radial flow for chromatography column models #120 ) against analytical solution
• enable h5 reader in testrunner (Add h5 to testrunner and use static libraries in debug mode #172)
• numerical reference solution tests
  • read model setup directly from CADET-Database, not from CADET-Core
  • reference data in h5 files, setup data in json (which can later be read from CADET-Database, CADET-reference) (Fix and expand tests #155)
  • add meta data to reference data (source, name, info/description (hash will come in the future with CADET-database)) (Fix and expand tests #155)
    • model setups (will be updated by CADET-Database in the future) (Fix and expand tests #155)
  • System with multiple unit operations, possibly a SMB
  • Non-linear bindings for all chromatography units (numerical reference): LWE (Fix and expand tests #155)
  • Extensive single unit examples that test full functionality of the unit, ie Multiple particle types, shapes, binding per type
  • experimental convergence order (EOC) tests (Fix and expand tests #155)
• analytical Jacobian tests for all units using AD (Fix and expand tests #155)
• create CADET-RDM project with python code that creates the reference data (Fix and expand tests #155)
• CI
  • add CI flag (Fix and expand tests #155)
  • add tests to github actions (Fix and expand tests #155)
  • include 2D GRM tests in CI
  • add release CI flags which additionally includes EOC tests

We also need to add documentation on how to add and maintain the tests in the developer guide #181

• maintain tests section: FD test issues and tolerances