MassSpecDashBoard

mass spectrometer dashboard for every user to master the status for the big toy. Happy mass spec-ing :)

How to use:

python script/massspecdashboard.py your_config_file

config file format:

identifier1: file directory1
identifier2: file directory2
identifier3: file directory3
...
THRESHOLD:
    - protein: number_of_protein_threshold
    - peptide: number_of_peptide_threshold
    - PSM: number_of_PSM_threshold

for PD_ID, please use result reporter node of PD 2.x. ignore the suffix of PD output. e.g.:

with identifier of condition 1:

directory/your_filename_Proteins.txt
directory/your_filename_PSM.txt
directory/your_filename_PeptideGroups.txt

we should have condition 1: directory/your_filename in YAML config file.

Report

• a TXT file of meta data and result DataFrame
• several PNG figures of protein, peptide, and PSM
• a PDF file of three level figures