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Apr 23, 2018
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Apr 23, 2018

README.md

loomR

An R interface for loom files

For more information on loom files, please see the documentation for loompy

Tutorial

A tutorial for loomR can be found here. A full function and method reference can be found here.

Compatability with loompy

loomR aims to be completely compatible with loompy. Currently, loomR implements the following methods of the loompy API:

  • map/apply
  • create
  • connect
  • combine
  • subset
  • add layer
  • add attriute
  • add graph
  • add cells
  • add loom

Dependencies

loomR depends on:

To get the HDF5 C++ API, please see the table below:

Operating system Command
macOS Using Homebrew, brew install hdf5
Debian and Debian-based OSes sudo apt install libhdf5-dev
Red Hat-based OSes sudo dnf install hdf5-devel or sudo yum install hdf5-devel
Windows Download precombiled binaries from Mario Annau here
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