Skip to content
An R-based interface for loom files
Branch: master
Clone or download
Latest commit df0144b Apr 25, 2018
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
R Update to 0.2.0 Apr 23, 2018
man Update to 0.2.0 Apr 23, 2018
.Rbuildignore
.gitignore Update .gitignore Apr 18, 2018
DESCRIPTION Update DESCRIPTION Apr 25, 2018
NAMESPACE
README.md
loomR.Rproj

README.md

loomR

An R interface for loom files

For more information on loom files, please see the documentation for loompy

Tutorial

A tutorial for loomR can be found here. A full function and method reference can be found here.

Compatability with loompy

loomR aims to be completely compatible with loompy. Currently, loomR implements the following methods of the loompy API:

  • map/apply
  • create
  • connect
  • combine
  • subset
  • add layer
  • add attriute
  • add graph
  • add cells
  • add loom

Dependencies

loomR depends on:

To get the HDF5 C++ API, please see the table below:

Operating system Command
macOS Using Homebrew, brew install hdf5
Debian and Debian-based OSes sudo apt install libhdf5-dev
Red Hat-based OSes sudo dnf install hdf5-devel or sudo yum install hdf5-devel
Windows Download precombiled binaries from Mario Annau here
You can’t perform that action at this time.
You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session.