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NullPointerException when importing test-edgecases.vcf #5035

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tommydeboer opened this issue Jul 7, 2016 · 1 comment
Closed

NullPointerException when importing test-edgecases.vcf #5035

tommydeboer opened this issue Jul 7, 2016 · 1 comment

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@tommydeboer
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Reproduce

Import molgenis-annotators/src/test/resources/test-edgecases.vcf

Expected

File is imported

Observed

java.lang.NullPointerException: null
    at org.molgenis.data.vcf.utils.VcfUtils.createId(VcfUtils.java:64) ~[molgenis-data-vcf-2.0.0-SNAPSHOT.jar:na]
    at org.molgenis.data.vcf.format.VcfToEntity.toEntity(VcfToEntity.java:274) ~[molgenis-data-vcf-2.0.0-SNAPSHOT.jar:na]
    at com.google.common.collect.Iterators$8.transform(Iterators.java:794) ~[guava-16.0.1.jar:na]
    at com.google.common.collect.TransformedIterator.next(TransformedIterator.java:48) ~[guava-16.0.1.jar:na]
    at org.molgenis.data.vcf.importer.VcfImporterService.importVcf(VcfImporterService.java:172) ~[molgenis-data-vcf-2.0.0-SNAPSHOT.jar:na]
    at org.molgenis.data.vcf.importer.VcfImporterService.doImport(VcfImporterService.java:62) ~[molgenis-data-vcf-2.0.0-SNAPSHOT.jar:na]
@tommydeboer
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Seems to be fixed.

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