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Feat/proof of concept #7

Merged
merged 31 commits into from
Nov 11, 2021
Merged

Feat/proof of concept #7

merged 31 commits into from
Nov 11, 2021

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davidruvolo51
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@davidruvolo51 davidruvolo51 commented Nov 11, 2021 •
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This request introduces the following changes:

  • New Model: A complete rewrite of the model that incorporates FairGenomes and other internal databases
  • EMX Support: EMX1 and EMX2 versions of the model are available (EMX2 works, but will likely change)
  • Lookups: datasets; workflows for download or collating lookup tables
  • Setup script: a script containing all commands for setting up the URDM
  • Model Schemas: overview of the model

@davidruvolo51
initial model (added patients)
e64f223
@davidruvolo51
initial patients, consent, and clinical modules
cac4d23
@davidruvolo51
init files module
6d2d6e8
@davidruvolo51
initial model (added patients)
99ba36c
@davidruvolo51
initial patients, consent, and clinical modules
a12338e
@davidruvolo51
init files module
9f0fa75
@davidruvolo51
init samples module + minor revions
29bd096
@davidruvolo51
updated readme
4d77a4e
@davidruvolo51
fixed merge conflicts
2233a92
@davidruvolo51
fixed merge conflicts
7119a83
@davidruvolo51
init model draft
fadf8ed
@davidruvolo51
added genome ref attribute
b9ad4c4
@davidruvolo51
fixed emx2 import issues
c126976
@davidruvolo51
updated ignore rules
c7a7854
@davidruvolo51
revised model for demo
f01ddff
@davidruvolo51
updated README
85e66a9
@davidruvolo51
fixed spacing issue
f5c0502
@davidruvolo51
init emx1 model
bd7f78c
@davidruvolo51
renamed file
2c4fe08
@davidruvolo51
init lookups emx
3ead924
@davidruvolo51
init emx1 model
22b339a
@davidruvolo51
init lookup subdir
68a310f
@davidruvolo51
init new EMX1 model
2598342
@davidruvolo51
refresh schemas
bb3383c
@davidruvolo51
draft of EMX1 model
b374997
@davidruvolo51
init setup script
29f22fd
@davidruvolo51
reworked lookup table generation
8e99151
@davidruvolo51
working setup.sh script
5cd518f
@davidruvolo51
added demo commands
12df228
@davidruvolo51
init demo datasets
c039d74
@davidruvolo51 davidruvolo51 added the enhancement New feature or request label Nov 11, 2021
@davidruvolo51 davidruvolo51 self-assigned this Nov 11, 2021
@davidruvolo51 davidruvolo51 merged commit afb245a into main Nov 11, 2021
@davidruvolo51 davidruvolo51 mentioned this pull request Nov 11, 2021
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