fix: retrieve vcfMeta from report instead of report.binary

molgenis · Jan 26, 2024 · aca7dbd · aca7dbd
1 parent bc94dec
commit aca7dbd
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Showing 3 changed files with 4 additions and 6 deletions.
diff --git a/package.json b/package.json
@@ -1,6 +1,6 @@
 {
   "name": "@molgenis/vip-report-api",
-  "version": "5.0.1",
+  "version": "5.0.2",
   "description": "TypeScript Report API for Variant Call Format (VCF) Report Templates",
   "scripts": {
     "build": "tsc --build",

diff --git a/src/ApiClient.ts b/src/ApiClient.ts
@@ -30,6 +30,7 @@ export interface ReportData {
   data: Data;
   binary: BinaryReportData;
   decisionTree?: DecisionTree;
+  vcfMeta?: ExternalMetadata;
 }
 
 interface Data {
@@ -38,11 +39,9 @@ interface Data {
 
 export interface BinaryReportData {
   vcf?: Uint8Array;
-  vcfMeta?: ExternalMetadata;
   fastaGz?: { [key: string]: Uint8Array };
   genesGz?: Uint8Array;
   cram?: { [key: string]: Cram };
-  decisionTree?: DecisionTree;
 }
 
 export class ApiClient implements Api {

diff --git a/src/WindowApiClient.ts b/src/WindowApiClient.ts
@@ -10,7 +10,6 @@ export type EncodedReportData = {
   fastaGz?: { [key: string]: string };
   genesGz?: string;
   cram?: { [key: string]: { cram: string; crai: string } };
-  decisionTreeGz?: string;
 };
 
 declare global {
@@ -28,12 +27,12 @@ export class WindowApiClient extends ApiClient {
     if (reportData === undefined) {
       alert("This is a report template. Use the vip-report tool to create reports using this template and data.");
     }
-    const vcfMeta = reportData.binary.vcfMeta ? reportData.binary.vcfMeta : undefined;
+    const vcfMeta = reportData.vcfMeta ? reportData.vcfMeta : undefined;
     const vcf = parseVcf(new TextDecoder().decode(reportData.binary.vcf), vcfMeta);
     reportData.metadata.records = vcf.metadata;
     reportData.data.records = vcf.data;
     delete reportData.binary.vcf;
-    delete reportData.binary.vcfMeta;
+    delete reportData.vcfMeta;
     super(reportData);
   }
 }