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hicstuff flag/getopts build out #11

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molikd opened this issue Feb 15, 2022 · 4 comments
Closed
Tracked by #7

hicstuff flag/getopts build out #11

molikd opened this issue Feb 15, 2022 · 4 comments
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@molikd @tsimmonds
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enhancement New feature or request

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molikd commented Feb 15, 2022

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@molikd molikd mentioned this issue Feb 15, 2022
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@molikd molikd added the enhancement New feature or request label Feb 15, 2022
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molikd commented Apr 12, 2022

@tsimmonds do we need the mininum quality flag for HiCstuff? https://github.com/koszullab/hicstuff#Full-pipeline

@scottgeib I'm thinking of switching hicstuff to minimap2 for continuity

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This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days

@github-actions github-actions bot added the no-issue-activity Issue has no activity label Jul 22, 2022
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molikd commented Jul 22, 2022

it's possible that the user might want to change the hicstuff alinger and/or the minimum mapping quality. ( --quality-min )

thoughts?

@molikd molikd removed the no-issue-activity Issue has no activity label Jul 22, 2022
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molikd commented Jul 22, 2022

doesn't look like there is anything to change here either.

@molikd molikd closed this as completed Jul 22, 2022
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