fwdpp fails internal tests. New gsl.

[tmozgach]

https://github.com/Homebrew/homebrew-science/pull/5859
Hello,
gsl was recently updated and now brew install fwdpp -s fails.

There is a log:

=========================================

Running 31 test cases...
integration/sugar_matrixTest.cc(236): fatal error: in "singlepop_hapmatrix_GSL_behavior": critical check v.matrix.size1 == 0 has failed [260 != 0]

*** 1 failure is detected in the test module "sugar_integration_tests" ```
 

[molpopgen]

What gsl version does brew use?

On Wed, Jun 28, 2017, 4:43 PM tmozgach ***@***.***> wrote: Hello, gsl was recently updated and now brew install fwdpp -s fails. There is a log: ========================================= Running 31 test cases... integration/sugar_matrixTest.cc(236): fatal error: in "singlepop_hapmatrix_GSL_behavior": critical check v.matrix.size1 == 0 has failed [260 != 0] *** 1 failure is detected in the test module "sugar_integration_tests" ``` https://github.com/Homebrew/homebrew-science/pull/5859 — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#51>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGHnH62oAea48G4EOR5Gub9qxh1PUWiDks5sIuR7gaJpZM4OIqff> .

-- Kevin Thornton Associate Professor Ecology and Evolutionary Biology UC Irvine http://www.molpopgen.org http://github.com/ThorntonLab http://guthub.com/molpopgen

[tmozgach]

@molpopgen gsl 2.4.

[molpopgen]

OK, I can confirm on OS X. I'll look into it. In the mean time, you may want to pin the required version at whatever worked before.

[molpopgen]

@tmozgach The test that is failing is checking if GSL raises a signal when trying to construct a matrix view from empty data. GSL <= 2.0 do indeed raise an exception. 2.4 does not, and I don't know where the change was introduced. I will peek at the GSL source code, but will probably simply remove the failing test from the fwdpp testing suite. This change will make it into 0.5.6, which is currently the dev branch on github, and is overdue for a release anyways.

[molpopgen]

Closing--fixed with release of 0.5.6